miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24405 5' -53 NC_005264.1 + 34092 0.66 0.985112
Target:  5'- uGCCGCg--GCGgGcACAAUGGCUcagCGg -3'
miRNA:   3'- -CGGCGagaCGCgC-UGUUGCUGAaa-GC- -5'
24405 5' -53 NC_005264.1 + 84865 0.67 0.971154
Target:  5'- cCCGCUCcgguacGCGCGGCGcCGGCaggucucuucuguUUUCGg -3'
miRNA:   3'- cGGCGAGa-----CGCGCUGUuGCUG-------------AAAGC- -5'
24405 5' -53 NC_005264.1 + 106517 0.67 0.965328
Target:  5'- --gGCggUGCGCGACGGCGGCagcgCGg -3'
miRNA:   3'- cggCGagACGCGCUGUUGCUGaaa-GC- -5'
24405 5' -53 NC_005264.1 + 109279 1.11 0.004744
Target:  5'- cGCCGCUCUGCGCGACAACGACUUUCGu -3'
miRNA:   3'- -CGGCGAGACGCGCUGUUGCUGAAAGC- -5'
24405 5' -53 NC_005264.1 + 145810 0.66 0.983275
Target:  5'- gGCCGCgCUGC-UGGCGACGA---UCGc -3'
miRNA:   3'- -CGGCGaGACGcGCUGUUGCUgaaAGC- -5'
24405 5' -53 NC_005264.1 + 46890 0.66 0.981272
Target:  5'- cGCCGCguaccuccuagCUGCGCcGCGuguucGCGGCUcUCa -3'
miRNA:   3'- -CGGCGa----------GACGCGcUGU-----UGCUGAaAGc -5'
24405 5' -53 NC_005264.1 + 16171 0.66 0.981272
Target:  5'- uGCCGCcCUGCGCGGaggucggucGCGGCa---- -3'
miRNA:   3'- -CGGCGaGACGCGCUgu-------UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 153512 0.66 0.981063
Target:  5'- gGCCGCccCUG-GCGGgGACGAacggaacCUUUCGu -3'
miRNA:   3'- -CGGCGa-GACgCGCUgUUGCU-------GAAAGC- -5'
24405 5' -53 NC_005264.1 + 54553 0.66 0.976736
Target:  5'- cGCCGaCUCggucaGCGCGAUucucguggggcGCGACgggUCGg -3'
miRNA:   3'- -CGGC-GAGa----CGCGCUGu----------UGCUGaa-AGC- -5'
24405 5' -53 NC_005264.1 + 95501 0.67 0.97144
Target:  5'- cGCC-CUCUuCGCGGCGGCGA---UCGu -3'
miRNA:   3'- -CGGcGAGAcGCGCUGUUGCUgaaAGC- -5'
24405 5' -53 NC_005264.1 + 119372 0.66 0.976736
Target:  5'- aGCgaGCUCUGCGCGcgaagaucaaacACAACGcGCUUaUGg -3'
miRNA:   3'- -CGg-CGAGACGCGC------------UGUUGC-UGAAaGC- -5'
24405 5' -53 NC_005264.1 + 38617 0.66 0.979095
Target:  5'- cGCCGCg--GCGCGAgAcACGACa---- -3'
miRNA:   3'- -CGGCGagaCGCGCUgU-UGCUGaaagc -5'
24405 5' -53 NC_005264.1 + 35443 0.66 0.983275
Target:  5'- cGCCGCgUCcgGCGCcgguaagcauCAGCGACggUCGc -3'
miRNA:   3'- -CGGCG-AGa-CGCGcu--------GUUGCUGaaAGC- -5'
24405 5' -53 NC_005264.1 + 155944 0.66 0.974186
Target:  5'- aGCCGCgcgcugggaCUGCGCGGCucGCGgacgcucugGCUgccgUCGg -3'
miRNA:   3'- -CGGCGa--------GACGCGCUGu-UGC---------UGAa---AGC- -5'
24405 5' -53 NC_005264.1 + 156176 0.66 0.983275
Target:  5'- cGCgGCUUUGCggcgugGCGGCGcCGGCUauaugUCGg -3'
miRNA:   3'- -CGgCGAGACG------CGCUGUuGCUGAa----AGC- -5'
24405 5' -53 NC_005264.1 + 66501 0.66 0.979095
Target:  5'- gGCUGCgcgGCGCGcuCGACGagcucGCUUUCGc -3'
miRNA:   3'- -CGGCGagaCGCGCu-GUUGC-----UGAAAGC- -5'
24405 5' -53 NC_005264.1 + 51498 0.66 0.974186
Target:  5'- uCUGacaUCUGCGCGucgacUAGCGACUUUgGg -3'
miRNA:   3'- cGGCg--AGACGCGCu----GUUGCUGAAAgC- -5'
24405 5' -53 NC_005264.1 + 128072 0.67 0.971154
Target:  5'- aGCgGCUCaucuucgUGUaGCGACAGCGGCgacCGg -3'
miRNA:   3'- -CGgCGAG-------ACG-CGCUGUUGCUGaaaGC- -5'
24405 5' -53 NC_005264.1 + 95343 0.66 0.983275
Target:  5'- cGCCGCgaaacggacUCgGCGgGGCGGCGGCccggccUCGg -3'
miRNA:   3'- -CGGCG---------AGaCGCgCUGUUGCUGaa----AGC- -5'
24405 5' -53 NC_005264.1 + 3075 0.66 0.981272
Target:  5'- cGCCGCgaCUG-GCGGCGGCcgagGACccgUUCGg -3'
miRNA:   3'- -CGGCGa-GACgCGCUGUUG----CUGa--AAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.