Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24406 | 5' | -59.9 | NC_005264.1 | + | 108958 | 1.09 | 0.001268 |
Target: 5'- gGGCCCUGCUCAAGCCCUACACGGGGUa -3' miRNA: 3'- -CCGGGACGAGUUCGGGAUGUGCCCCA- -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 57252 | 0.78 | 0.17026 |
Target: 5'- cGGUCUUgaggcGCUCGAGCCCUAgccCGCGGGGg -3' miRNA: 3'- -CCGGGA-----CGAGUUCGGGAU---GUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 3834 | 0.73 | 0.373811 |
Target: 5'- cGGagaCCUGCUCcuggcauGGGUCCUGCGCcGGGGa -3' miRNA: 3'- -CCg--GGACGAG-------UUCGGGAUGUG-CCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 25788 | 0.72 | 0.390758 |
Target: 5'- aGUCUUGCUCGuGCuCCUAUAUGGGGc -3' miRNA: 3'- cCGGGACGAGUuCG-GGAUGUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 159644 | 0.72 | 0.41073 |
Target: 5'- gGGUCCUGCgaaaUAAGCCCUuccccgcgccgucgcGCGCGGaGGg -3' miRNA: 3'- -CCGGGACGa---GUUCGGGA---------------UGUGCC-CCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 75207 | 0.71 | 0.450721 |
Target: 5'- cGCCCcacgcgGCUgCAucGGCCCUGCGCGGcGGc -3' miRNA: 3'- cCGGGa-----CGA-GU--UCGGGAUGUGCC-CCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 10599 | 0.71 | 0.4543 |
Target: 5'- gGGCCCcGUUUAAGCaCCUGCAauaaaaaaauuacucUGGGGa -3' miRNA: 3'- -CCGGGaCGAGUUCG-GGAUGU---------------GCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 129626 | 0.71 | 0.4543 |
Target: 5'- gGGCCCcGUUUAAGCaCCUGCAauaaaaaaauuacucUGGGGa -3' miRNA: 3'- -CCGGGaCGAGUUCG-GGAUGU---------------GCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 3810 | 0.71 | 0.459696 |
Target: 5'- cGGUCCgcgaGUUCGGGCCCgg-GCGGGGc -3' miRNA: 3'- -CCGGGa---CGAGUUCGGGaugUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 122836 | 0.71 | 0.459696 |
Target: 5'- cGGUCCgcgaGUUCGGGCCCgg-GCGGGGc -3' miRNA: 3'- -CCGGGa---CGAGUUCGGGaugUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 148215 | 0.7 | 0.505911 |
Target: 5'- aGGCucgCCUGCUCGAGagaCC-ACACGGGa- -3' miRNA: 3'- -CCG---GGACGAGUUCg--GGaUGUGCCCca -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 114991 | 0.7 | 0.505911 |
Target: 5'- gGGCCCUGCc----CCCgcCACGGGGg -3' miRNA: 3'- -CCGGGACGaguucGGGauGUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 67029 | 0.69 | 0.554002 |
Target: 5'- cGGCCUUGCgCAGGCCCccgACguaagGCGGcGGa -3' miRNA: 3'- -CCGGGACGaGUUCGGGa--UG-----UGCC-CCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 147985 | 0.69 | 0.563795 |
Target: 5'- uGGCCCUGg-CAAGCCuCUGCACGa--- -3' miRNA: 3'- -CCGGGACgaGUUCGG-GAUGUGCccca -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 153330 | 0.69 | 0.573632 |
Target: 5'- aGGCCagUGUUCGuguGCuCCUuCACGGGGg -3' miRNA: 3'- -CCGGg-ACGAGUu--CG-GGAuGUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 119928 | 0.68 | 0.623285 |
Target: 5'- cGGCCCcGUgucgCGGGCC--GCugGGGGg -3' miRNA: 3'- -CCGGGaCGa---GUUCGGgaUGugCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 902 | 0.68 | 0.623285 |
Target: 5'- cGGCCCcGUgucgCGGGCC--GCugGGGGg -3' miRNA: 3'- -CCGGGaCGa---GUUCGGgaUGugCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 109959 | 0.67 | 0.670112 |
Target: 5'- cGGCCCUGCUgauggcagguaccgCGAGCCUgcccGCuCGGGu- -3' miRNA: 3'- -CCGGGACGA--------------GUUCGGGa---UGuGCCCca -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 18414 | 0.67 | 0.673088 |
Target: 5'- cGGCCg-GCgcaggCGcGCCCUcucgcucgGCGCGGGGUc -3' miRNA: 3'- -CCGGgaCGa----GUuCGGGA--------UGUGCCCCA- -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 143629 | 0.67 | 0.682984 |
Target: 5'- cGGCCCUGCU----CCCUGCACaccauGGGc -3' miRNA: 3'- -CCGGGACGAguucGGGAUGUGc----CCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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