Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24406 | 5' | -59.9 | NC_005264.1 | + | 129626 | 0.71 | 0.4543 |
Target: 5'- gGGCCCcGUUUAAGCaCCUGCAauaaaaaaauuacucUGGGGa -3' miRNA: 3'- -CCGGGaCGAGUUCG-GGAUGU---------------GCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 122836 | 0.71 | 0.459696 |
Target: 5'- cGGUCCgcgaGUUCGGGCCCgg-GCGGGGc -3' miRNA: 3'- -CCGGGa---CGAGUUCGGGaugUGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 67029 | 0.69 | 0.554002 |
Target: 5'- cGGCCUUGCgCAGGCCCccgACguaagGCGGcGGa -3' miRNA: 3'- -CCGGGACGaGUUCGGGa--UG-----UGCC-CCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 119928 | 0.68 | 0.623285 |
Target: 5'- cGGCCCcGUgucgCGGGCC--GCugGGGGg -3' miRNA: 3'- -CCGGGaCGa---GUUCGGgaUGugCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 18414 | 0.67 | 0.673088 |
Target: 5'- cGGCCg-GCgcaggCGcGCCCUcucgcucgGCGCGGGGUc -3' miRNA: 3'- -CCGGgaCGa----GUuCGGGA--------UGUGCCCCA- -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 110817 | 0.67 | 0.682984 |
Target: 5'- gGGCCUagcGUUCGGGUCUga-GCGGGGUc -3' miRNA: 3'- -CCGGGa--CGAGUUCGGGaugUGCCCCA- -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 81627 | 0.67 | 0.682984 |
Target: 5'- cGGCCgaUGCUCAuauGCCU--CGCGGuGGUg -3' miRNA: 3'- -CCGGg-ACGAGUu--CGGGauGUGCC-CCA- -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 37442 | 0.67 | 0.71143 |
Target: 5'- aGGCUCUGCUCAAGCgauccauggagcaCCa--GCGGGa- -3' miRNA: 3'- -CCGGGACGAGUUCG-------------GGaugUGCCCca -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 63256 | 0.66 | 0.724982 |
Target: 5'- aGGCCCUccagaauccgcaccgGCUCGagagaggacaaccGGCCCcAguCGGGGg -3' miRNA: 3'- -CCGGGA---------------CGAGU-------------UCGGGaUguGCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 159024 | 0.66 | 0.731703 |
Target: 5'- cGGCCCcGCcCGGGCCCgaacuCGCGGa-- -3' miRNA: 3'- -CCGGGaCGaGUUCGGGau---GUGCCcca -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 116404 | 0.66 | 0.741235 |
Target: 5'- cGGCUCUcGCU-GAGCCCgcggcaggucGCugGGGGc -3' miRNA: 3'- -CCGGGA-CGAgUUCGGGa---------UGugCCCCa -5' |
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24406 | 5' | -59.9 | NC_005264.1 | + | 3834 | 0.73 | 0.373811 |
Target: 5'- cGGagaCCUGCUCcuggcauGGGUCCUGCGCcGGGGa -3' miRNA: 3'- -CCg--GGACGAG-------UUCGGGAUGUG-CCCCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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