miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24407 3' -59.2 NC_005264.1 + 16067 0.66 0.832309
Target:  5'- ---aCCGaGaaccGCCGCGCGGCGCUUgCUg -3'
miRNA:   3'- ccuaGGC-Cac--CGGCGCGCUGCGAA-GA- -5'
24407 3' -59.2 NC_005264.1 + 93070 0.66 0.832309
Target:  5'- --cUgCGGgaggGGCCGCgGCGACcucgGCUUCUc -3'
miRNA:   3'- ccuAgGCCa---CCGGCG-CGCUG----CGAAGA- -5'
24407 3' -59.2 NC_005264.1 + 38445 0.66 0.819217
Target:  5'- cGAgcgCCGGUgugaaucauccgcgaGGCCGCccgggacgaGCGAcCGCUUCg -3'
miRNA:   3'- cCUa--GGCCA---------------CCGGCG---------CGCU-GCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 157472 0.66 0.819217
Target:  5'- cGAgcgCCGGUgugaaucauccgcgaGGCCGCccgggacgaGCGAcCGCUUCg -3'
miRNA:   3'- cCUa--GGCCA---------------CCGGCG---------CGCU-GCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 49349 0.66 0.790087
Target:  5'- aGGGUCgCGGuUGGCacuCGCGCGACcGUggCa -3'
miRNA:   3'- -CCUAG-GCC-ACCG---GCGCGCUG-CGaaGa -5'
24407 3' -59.2 NC_005264.1 + 151344 0.66 0.790087
Target:  5'- ----aUGGgcaagGGCCGCGCGGC-CUUCg -3'
miRNA:   3'- ccuagGCCa----CCGGCGCGCUGcGAAGa -5'
24407 3' -59.2 NC_005264.1 + 31117 0.66 0.789206
Target:  5'- aGGAUCCGGUcccgggcguGGuCCGCGaCGgacccguGCGgUUCUa -3'
miRNA:   3'- -CCUAGGCCA---------CC-GGCGC-GC-------UGCgAAGA- -5'
24407 3' -59.2 NC_005264.1 + 150144 0.66 0.789206
Target:  5'- aGGAUCCGGUcccgggcguGGuCCGCGaCGgacccguGCGgUUCUa -3'
miRNA:   3'- -CCUAGGCCA---------CC-GGCGC-GC-------UGCgAAGA- -5'
24407 3' -59.2 NC_005264.1 + 6180 0.67 0.781214
Target:  5'- uGGGgcacgCCGGUcgccauGGCCGUGCGAgaCGCgUCc -3'
miRNA:   3'- -CCUa----GGCCA------CCGGCGCGCU--GCGaAGa -5'
24407 3' -59.2 NC_005264.1 + 125207 0.67 0.781214
Target:  5'- uGGGgcacgCCGGUcgccauGGCCGUGCGAgaCGCgUCc -3'
miRNA:   3'- -CCUa----GGCCA------CCGGCGCGCU--GCGaAGa -5'
24407 3' -59.2 NC_005264.1 + 35031 0.67 0.7631
Target:  5'- -uGUCgGGagaUGGCuCGCGCGACGUcgUCa -3'
miRNA:   3'- ccUAGgCC---ACCG-GCGCGCUGCGa-AGa -5'
24407 3' -59.2 NC_005264.1 + 59752 0.67 0.744552
Target:  5'- uGGGg-CGGcGGCUGCGacgcgGACGCUUCg -3'
miRNA:   3'- -CCUagGCCaCCGGCGCg----CUGCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 38644 0.67 0.738914
Target:  5'- aGAUcCCGGaaaccgucgagaugaUGGCCGCGgCGGCGCccaUCa -3'
miRNA:   3'- cCUA-GGCC---------------ACCGGCGC-GCUGCGa--AGa -5'
24407 3' -59.2 NC_005264.1 + 68606 0.68 0.725638
Target:  5'- --uUUCGuGUGGCCGCGUaGCGCaUCg -3'
miRNA:   3'- ccuAGGC-CACCGGCGCGcUGCGaAGa -5'
24407 3' -59.2 NC_005264.1 + 43629 0.68 0.725638
Target:  5'- ---cUCGcGUGGUCGCGCGuuacgcuCGCUUCg -3'
miRNA:   3'- ccuaGGC-CACCGGCGCGCu------GCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 51796 0.68 0.686971
Target:  5'- -cGUCCGGcGaGuCCGCGCGAgccacCGCUUCg -3'
miRNA:   3'- ccUAGGCCaC-C-GGCGCGCU-----GCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 152379 0.69 0.667351
Target:  5'- gGGAUCCGGccuaucGGCgGCGaucCGCUUCg -3'
miRNA:   3'- -CCUAGGCCa-----CCGgCGCgcuGCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 33352 0.69 0.667351
Target:  5'- gGGAUCCGGccuaucGGCgGCGaucCGCUUCg -3'
miRNA:   3'- -CCUAGGCCa-----CCGgCGCgcuGCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 26362 0.69 0.637739
Target:  5'- uGcgCCGcGgcaGGCUGCGCGGCGCcgUCUc -3'
miRNA:   3'- cCuaGGC-Ca--CCGGCGCGCUGCGa-AGA- -5'
24407 3' -59.2 NC_005264.1 + 24874 0.69 0.62785
Target:  5'- cGGAgCCGG-GGCgGCaCGAgGCUUCg -3'
miRNA:   3'- -CCUaGGCCaCCGgCGcGCUgCGAAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.