miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24407 3' -59.2 NC_005264.1 + 102782 0.69 0.617965
Target:  5'- -aGUUCGGUGGCCuguguuGCGCGAUGCc--- -3'
miRNA:   3'- ccUAGGCCACCGG------CGCGCUGCGaaga -5'
24407 3' -59.2 NC_005264.1 + 146757 0.71 0.549409
Target:  5'- cGGAcCCGGcaacagcaaGcGCCGCGCGGCGgUUCUc -3'
miRNA:   3'- -CCUaGGCCa--------C-CGGCGCGCUGCgAAGA- -5'
24407 3' -59.2 NC_005264.1 + 107183 0.71 0.536903
Target:  5'- aGGAUaCCGG-GGCCGCcaaaacuaaaggcgGCGGCGCgcgCg -3'
miRNA:   3'- -CCUA-GGCCaCCGGCG--------------CGCUGCGaa-Ga -5'
24407 3' -59.2 NC_005264.1 + 93836 0.71 0.520702
Target:  5'- cGGUUCGGuUGGCCGUGCG-CGCa--- -3'
miRNA:   3'- cCUAGGCC-ACCGGCGCGCuGCGaaga -5'
24407 3' -59.2 NC_005264.1 + 123483 0.71 0.511261
Target:  5'- gGGcAUgCGGUGGCCGCGCGguuGCUgggCg -3'
miRNA:   3'- -CC-UAgGCCACCGGCGCGCug-CGAa--Ga -5'
24407 3' -59.2 NC_005264.1 + 53278 0.74 0.380201
Target:  5'- aGAUCC--UGGCCGCGCGG-GCUUCg -3'
miRNA:   3'- cCUAGGccACCGGCGCGCUgCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 55829 0.75 0.315883
Target:  5'- ---gCCGGUGGCgGCGCGGCugacugggccucaggGCUUCUg -3'
miRNA:   3'- ccuaGGCCACCGgCGCGCUG---------------CGAAGA- -5'
24407 3' -59.2 NC_005264.1 + 19425 0.76 0.306224
Target:  5'- aGGcgCCGGgugUGGCCGCGgGGCGCg--- -3'
miRNA:   3'- -CCuaGGCC---ACCGGCGCgCUGCGaaga -5'
24407 3' -59.2 NC_005264.1 + 5613 0.77 0.261324
Target:  5'- cGGAgCCGcuaucgGGCCGCGCGACGCUa-- -3'
miRNA:   3'- -CCUaGGCca----CCGGCGCGCUGCGAaga -5'
24407 3' -59.2 NC_005264.1 + 124640 0.77 0.261324
Target:  5'- cGGAgCCGcuaucgGGCCGCGCGACGCUa-- -3'
miRNA:   3'- -CCUaGGCca----CCGGCGCGCUGCGAaga -5'
24407 3' -59.2 NC_005264.1 + 108473 1.09 0.001645
Target:  5'- gGGAUCCGGUGGCCGCGCGACGCUUCUa -3'
miRNA:   3'- -CCUAGGCCACCGGCGCGCUGCGAAGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.