miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24407 3' -59.2 NC_005264.1 + 157472 0.66 0.819217
Target:  5'- cGAgcgCCGGUgugaaucauccgcgaGGCCGCccgggacgaGCGAcCGCUUCg -3'
miRNA:   3'- cCUa--GGCCA---------------CCGGCG---------CGCU-GCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 152379 0.69 0.667351
Target:  5'- gGGAUCCGGccuaucGGCgGCGaucCGCUUCg -3'
miRNA:   3'- -CCUAGGCCa-----CCGgCGCgcuGCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 151344 0.66 0.790087
Target:  5'- ----aUGGgcaagGGCCGCGCGGC-CUUCg -3'
miRNA:   3'- ccuagGCCa----CCGGCGCGCUGcGAAGa -5'
24407 3' -59.2 NC_005264.1 + 150144 0.66 0.789206
Target:  5'- aGGAUCCGGUcccgggcguGGuCCGCGaCGgacccguGCGgUUCUa -3'
miRNA:   3'- -CCUAGGCCA---------CC-GGCGC-GC-------UGCgAAGA- -5'
24407 3' -59.2 NC_005264.1 + 146757 0.71 0.549409
Target:  5'- cGGAcCCGGcaacagcaaGcGCCGCGCGGCGgUUCUc -3'
miRNA:   3'- -CCUaGGCCa--------C-CGGCGCGCUGCgAAGA- -5'
24407 3' -59.2 NC_005264.1 + 125207 0.67 0.781214
Target:  5'- uGGGgcacgCCGGUcgccauGGCCGUGCGAgaCGCgUCc -3'
miRNA:   3'- -CCUa----GGCCA------CCGGCGCGCU--GCGaAGa -5'
24407 3' -59.2 NC_005264.1 + 124640 0.77 0.261324
Target:  5'- cGGAgCCGcuaucgGGCCGCGCGACGCUa-- -3'
miRNA:   3'- -CCUaGGCca----CCGGCGCGCUGCGAaga -5'
24407 3' -59.2 NC_005264.1 + 123483 0.71 0.511261
Target:  5'- gGGcAUgCGGUGGCCGCGCGguuGCUgggCg -3'
miRNA:   3'- -CC-UAgGCCACCGGCGCGCug-CGAa--Ga -5'
24407 3' -59.2 NC_005264.1 + 108473 1.09 0.001645
Target:  5'- gGGAUCCGGUGGCCGCGCGACGCUUCUa -3'
miRNA:   3'- -CCUAGGCCACCGGCGCGCUGCGAAGA- -5'
24407 3' -59.2 NC_005264.1 + 107183 0.71 0.536903
Target:  5'- aGGAUaCCGG-GGCCGCcaaaacuaaaggcgGCGGCGCgcgCg -3'
miRNA:   3'- -CCUA-GGCCaCCGGCG--------------CGCUGCGaa-Ga -5'
24407 3' -59.2 NC_005264.1 + 102782 0.69 0.617965
Target:  5'- -aGUUCGGUGGCCuguguuGCGCGAUGCc--- -3'
miRNA:   3'- ccUAGGCCACCGG------CGCGCUGCGaaga -5'
24407 3' -59.2 NC_005264.1 + 93836 0.71 0.520702
Target:  5'- cGGUUCGGuUGGCCGUGCG-CGCa--- -3'
miRNA:   3'- cCUAGGCC-ACCGGCGCGCuGCGaaga -5'
24407 3' -59.2 NC_005264.1 + 93070 0.66 0.832309
Target:  5'- --cUgCGGgaggGGCCGCgGCGACcucgGCUUCUc -3'
miRNA:   3'- ccuAgGCCa---CCGGCG-CGCUG----CGAAGA- -5'
24407 3' -59.2 NC_005264.1 + 68606 0.68 0.725638
Target:  5'- --uUUCGuGUGGCCGCGUaGCGCaUCg -3'
miRNA:   3'- ccuAGGC-CACCGGCGCGcUGCGaAGa -5'
24407 3' -59.2 NC_005264.1 + 59752 0.67 0.744552
Target:  5'- uGGGg-CGGcGGCUGCGacgcgGACGCUUCg -3'
miRNA:   3'- -CCUagGCCaCCGGCGCg----CUGCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 55829 0.75 0.315883
Target:  5'- ---gCCGGUGGCgGCGCGGCugacugggccucaggGCUUCUg -3'
miRNA:   3'- ccuaGGCCACCGgCGCGCUG---------------CGAAGA- -5'
24407 3' -59.2 NC_005264.1 + 53278 0.74 0.380201
Target:  5'- aGAUCC--UGGCCGCGCGG-GCUUCg -3'
miRNA:   3'- cCUAGGccACCGGCGCGCUgCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 51796 0.68 0.686971
Target:  5'- -cGUCCGGcGaGuCCGCGCGAgccacCGCUUCg -3'
miRNA:   3'- ccUAGGCCaC-C-GGCGCGCU-----GCGAAGa -5'
24407 3' -59.2 NC_005264.1 + 49349 0.66 0.790087
Target:  5'- aGGGUCgCGGuUGGCacuCGCGCGACcGUggCa -3'
miRNA:   3'- -CCUAG-GCC-ACCG---GCGCGCUG-CGaaGa -5'
24407 3' -59.2 NC_005264.1 + 43629 0.68 0.725638
Target:  5'- ---cUCGcGUGGUCGCGCGuuacgcuCGCUUCg -3'
miRNA:   3'- ccuaGGC-CACCGGCGCGCu------GCGAAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.