Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24407 | 3' | -59.2 | NC_005264.1 | + | 38644 | 0.67 | 0.738914 |
Target: 5'- aGAUcCCGGaaaccgucgagaugaUGGCCGCGgCGGCGCccaUCa -3' miRNA: 3'- cCUA-GGCC---------------ACCGGCGC-GCUGCGa--AGa -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 38445 | 0.66 | 0.819217 |
Target: 5'- cGAgcgCCGGUgugaaucauccgcgaGGCCGCccgggacgaGCGAcCGCUUCg -3' miRNA: 3'- cCUa--GGCCA---------------CCGGCG---------CGCU-GCGAAGa -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 35031 | 0.67 | 0.7631 |
Target: 5'- -uGUCgGGagaUGGCuCGCGCGACGUcgUCa -3' miRNA: 3'- ccUAGgCC---ACCG-GCGCGCUGCGa-AGa -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 33352 | 0.69 | 0.667351 |
Target: 5'- gGGAUCCGGccuaucGGCgGCGaucCGCUUCg -3' miRNA: 3'- -CCUAGGCCa-----CCGgCGCgcuGCGAAGa -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 31117 | 0.66 | 0.789206 |
Target: 5'- aGGAUCCGGUcccgggcguGGuCCGCGaCGgacccguGCGgUUCUa -3' miRNA: 3'- -CCUAGGCCA---------CC-GGCGC-GC-------UGCgAAGA- -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 26362 | 0.69 | 0.637739 |
Target: 5'- uGcgCCGcGgcaGGCUGCGCGGCGCcgUCUc -3' miRNA: 3'- cCuaGGC-Ca--CCGGCGCGCUGCGa-AGA- -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 24874 | 0.69 | 0.62785 |
Target: 5'- cGGAgCCGG-GGCgGCaCGAgGCUUCg -3' miRNA: 3'- -CCUaGGCCaCCGgCGcGCUgCGAAGa -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 19425 | 0.76 | 0.306224 |
Target: 5'- aGGcgCCGGgugUGGCCGCGgGGCGCg--- -3' miRNA: 3'- -CCuaGGCC---ACCGGCGCgCUGCGaaga -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 16067 | 0.66 | 0.832309 |
Target: 5'- ---aCCGaGaaccGCCGCGCGGCGCUUgCUg -3' miRNA: 3'- ccuaGGC-Cac--CGGCGCGCUGCGAA-GA- -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 6180 | 0.67 | 0.781214 |
Target: 5'- uGGGgcacgCCGGUcgccauGGCCGUGCGAgaCGCgUCc -3' miRNA: 3'- -CCUa----GGCCA------CCGGCGCGCU--GCGaAGa -5' |
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24407 | 3' | -59.2 | NC_005264.1 | + | 5613 | 0.77 | 0.261324 |
Target: 5'- cGGAgCCGcuaucgGGCCGCGCGACGCUa-- -3' miRNA: 3'- -CCUaGGCca----CCGGCGCGCUGCGAaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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