miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24407 5' -51.8 NC_005264.1 + 97428 0.66 0.99129
Target:  5'- -aGUGAGCGCUGCGgGCgccGCcGCg- -3'
miRNA:   3'- ggUAUUUGCGGCGCgCGaa-UGaCGac -5'
24407 5' -51.8 NC_005264.1 + 11489 0.66 0.99129
Target:  5'- cCCAUaacGAAgGCCGCGCGgccCUUGCccaugUGCa- -3'
miRNA:   3'- -GGUA---UUUgCGGCGCGC---GAAUG-----ACGac -5'
24407 5' -51.8 NC_005264.1 + 22711 0.66 0.99129
Target:  5'- gCCAcGAGUGCgGCGCGCaagcgugUGuCUGCUGc -3'
miRNA:   3'- -GGUaUUUGCGgCGCGCGa------AU-GACGAC- -5'
24407 5' -51.8 NC_005264.1 + 132490 0.66 0.99129
Target:  5'- gCCAc-GugGCCGCaGgGCa-GCUGCUGa -3'
miRNA:   3'- -GGUauUugCGGCG-CgCGaaUGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 40772 0.66 0.99129
Target:  5'- gCCAguuaggAGACGCaGCgGCGCUgcaaACUGCg- -3'
miRNA:   3'- -GGUa-----UUUGCGgCG-CGCGAa---UGACGac -5'
24407 5' -51.8 NC_005264.1 + 140841 0.66 0.99129
Target:  5'- aCC-UAcGCGCCGCGCcuuucGCUUGCgccagGCc- -3'
miRNA:   3'- -GGuAUuUGCGGCGCG-----CGAAUGa----CGac -5'
24407 5' -51.8 NC_005264.1 + 134776 0.66 0.99129
Target:  5'- cCCGUGuuCGCuucCGCGCGCUuuUACccgGCg- -3'
miRNA:   3'- -GGUAUuuGCG---GCGCGCGA--AUGa--CGac -5'
24407 5' -51.8 NC_005264.1 + 159798 0.66 0.99129
Target:  5'- gCCAguuaggAGACGCaGCgGCGCUgcaaACUGCg- -3'
miRNA:   3'- -GGUa-----UUUGCGgCG-CGCGAa---UGACGac -5'
24407 5' -51.8 NC_005264.1 + 56697 0.66 0.99129
Target:  5'- uCgGUAAGgcuCGCCGCGCGacaaGCUGCc- -3'
miRNA:   3'- -GgUAUUU---GCGGCGCGCgaa-UGACGac -5'
24407 5' -51.8 NC_005264.1 + 35734 0.66 0.990046
Target:  5'- cCUGUuuACGCCGCccGUGCccgACUGCg- -3'
miRNA:   3'- -GGUAuuUGCGGCG--CGCGaa-UGACGac -5'
24407 5' -51.8 NC_005264.1 + 44635 0.66 0.990046
Target:  5'- gCCuucuuGCGCCGCGC-CUUagACUGgUGc -3'
miRNA:   3'- -GGuauu-UGCGGCGCGcGAA--UGACgAC- -5'
24407 5' -51.8 NC_005264.1 + 154760 0.66 0.990046
Target:  5'- cCUGUuuACGCCGCccGUGCccgACUGCg- -3'
miRNA:   3'- -GGUAuuUGCGGCG--CGCGaa-UGACGac -5'
24407 5' -51.8 NC_005264.1 + 13019 0.66 0.990046
Target:  5'- aCCAUAcgUGUCGCGggacccuacggcCGCUcguCUGCUGu -3'
miRNA:   3'- -GGUAUuuGCGGCGC------------GCGAau-GACGAC- -5'
24407 5' -51.8 NC_005264.1 + 70349 0.66 0.988667
Target:  5'- uCCAcuAACGUgGCGUGCgucaagaUGCUGa -3'
miRNA:   3'- -GGUauUUGCGgCGCGCGaaug---ACGAC- -5'
24407 5' -51.8 NC_005264.1 + 23216 0.66 0.988667
Target:  5'- gCCGUGc-CGCCGCGCGag--UUGUUGg -3'
miRNA:   3'- -GGUAUuuGCGGCGCGCgaauGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 24 0.66 0.988667
Target:  5'- gCCAU-AACGCCGCGgCcCUaGCUGUUc -3'
miRNA:   3'- -GGUAuUUGCGGCGC-GcGAaUGACGAc -5'
24407 5' -51.8 NC_005264.1 + 20815 0.66 0.988667
Target:  5'- gCCAUGcACGCCaauCGCGCggACgGCg- -3'
miRNA:   3'- -GGUAUuUGCGGc--GCGCGaaUGaCGac -5'
24407 5' -51.8 NC_005264.1 + 145368 0.66 0.988667
Target:  5'- ---aAGACgGCCaGaCGCGCUUACUGUg- -3'
miRNA:   3'- gguaUUUG-CGG-C-GCGCGAAUGACGac -5'
24407 5' -51.8 NC_005264.1 + 28859 0.66 0.988667
Target:  5'- aUCGUAAACGgcCCGCGCggGCUagguuucaugaACUGCUGc -3'
miRNA:   3'- -GGUAUUUGC--GGCGCG--CGAa----------UGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 118687 0.66 0.987144
Target:  5'- -gAUAcGCGCuCGCGCGgCUUAcCUGCc- -3'
miRNA:   3'- ggUAUuUGCG-GCGCGC-GAAU-GACGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.