miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24407 5' -51.8 NC_005264.1 + 24 0.66 0.988667
Target:  5'- gCCAU-AACGCCGCGgCcCUaGCUGUUc -3'
miRNA:   3'- -GGUAuUUGCGGCGC-GcGAaUGACGAc -5'
24407 5' -51.8 NC_005264.1 + 3427 0.67 0.979433
Target:  5'- aCGUAGG-GCCGCGCcCgcGCUGCUc -3'
miRNA:   3'- gGUAUUUgCGGCGCGcGaaUGACGAc -5'
24407 5' -51.8 NC_005264.1 + 8376 0.7 0.92042
Target:  5'- aCCGgcgccGGACGCgGCGCGUUgaaGCUGCc- -3'
miRNA:   3'- -GGUa----UUUGCGgCGCGCGAa--UGACGac -5'
24407 5' -51.8 NC_005264.1 + 11489 0.66 0.99129
Target:  5'- cCCAUaacGAAgGCCGCGCGgccCUUGCccaugUGCa- -3'
miRNA:   3'- -GGUA---UUUgCGGCGCGC---GAAUG-----ACGac -5'
24407 5' -51.8 NC_005264.1 + 11974 0.71 0.881462
Target:  5'- gCCAUGucuUGCCGCGCGCggcACgGCa- -3'
miRNA:   3'- -GGUAUuu-GCGGCGCGCGaa-UGaCGac -5'
24407 5' -51.8 NC_005264.1 + 13019 0.66 0.990046
Target:  5'- aCCAUAcgUGUCGCGggacccuacggcCGCUcguCUGCUGu -3'
miRNA:   3'- -GGUAUuuGCGGCGC------------GCGAau-GACGAC- -5'
24407 5' -51.8 NC_005264.1 + 16067 0.79 0.464607
Target:  5'- aCCGaGAAcCGCCGCgcgGCGCUUGCUGUUGc -3'
miRNA:   3'- -GGUaUUU-GCGGCG---CGCGAAUGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 19756 0.67 0.971709
Target:  5'- cCCAgcaucGCGCCGCGauugugacaCGCaUGCUGCa- -3'
miRNA:   3'- -GGUauu--UGCGGCGC---------GCGaAUGACGac -5'
24407 5' -51.8 NC_005264.1 + 20815 0.66 0.988667
Target:  5'- gCCAUGcACGCCaauCGCGCggACgGCg- -3'
miRNA:   3'- -GGUAUuUGCGGc--GCGCGaaUGaCGac -5'
24407 5' -51.8 NC_005264.1 + 22711 0.66 0.99129
Target:  5'- gCCAcGAGUGCgGCGCGCaagcgugUGuCUGCUGc -3'
miRNA:   3'- -GGUaUUUGCGgCGCGCGa------AU-GACGAC- -5'
24407 5' -51.8 NC_005264.1 + 23216 0.66 0.988667
Target:  5'- gCCGUGc-CGCCGCGCGag--UUGUUGg -3'
miRNA:   3'- -GGUAUuuGCGGCGCGCgaauGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 26344 0.68 0.962091
Target:  5'- gCUAUGAccuuagucuuguGCGCCGCG-GCagGCUGCg- -3'
miRNA:   3'- -GGUAUU------------UGCGGCGCgCGaaUGACGac -5'
24407 5' -51.8 NC_005264.1 + 28311 0.67 0.981621
Target:  5'- cCCAUG--UGCCGCGCGCcUACg---- -3'
miRNA:   3'- -GGUAUuuGCGGCGCGCGaAUGacgac -5'
24407 5' -51.8 NC_005264.1 + 28440 0.66 0.985468
Target:  5'- ---cAGAUGCCGCGgGCcgugaACUGCUc -3'
miRNA:   3'- gguaUUUGCGGCGCgCGaa---UGACGAc -5'
24407 5' -51.8 NC_005264.1 + 28859 0.66 0.988667
Target:  5'- aUCGUAAACGgcCCGCGCggGCUagguuucaugaACUGCUGc -3'
miRNA:   3'- -GGUAUUUGC--GGCGCG--CGAa----------UGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 29251 0.66 0.985468
Target:  5'- aCAgcggAGACuGCgGCGCGCagAUUGUUGg -3'
miRNA:   3'- gGUa---UUUG-CGgCGCGCGaaUGACGAC- -5'
24407 5' -51.8 NC_005264.1 + 31132 0.69 0.930892
Target:  5'- gCCAgcAACGCCGCGCaggcccacgcuacGCUUGCgaGCc- -3'
miRNA:   3'- -GGUauUUGCGGCGCG-------------CGAAUGa-CGac -5'
24407 5' -51.8 NC_005264.1 + 32393 0.69 0.931418
Target:  5'- gCCGgcgucCGCCGCGa-CUUugUGCUGg -3'
miRNA:   3'- -GGUauuu-GCGGCGCgcGAAugACGAC- -5'
24407 5' -51.8 NC_005264.1 + 34307 0.69 0.936539
Target:  5'- cUCGaGGGCGCCGCGC-CUgacGCUGgCUGa -3'
miRNA:   3'- -GGUaUUUGCGGCGCGcGAa--UGAC-GAC- -5'
24407 5' -51.8 NC_005264.1 + 34803 0.68 0.95454
Target:  5'- gCCAUcGACGCgGUaGCGCUaaugauguUGCUGCa- -3'
miRNA:   3'- -GGUAuUUGCGgCG-CGCGA--------AUGACGac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.