miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24408 3' -57 NC_005264.1 + 152951 0.66 0.886913
Target:  5'- gCCGcCAGGG-CUGggaAGGCCgUGgcGCGCc -3'
miRNA:   3'- -GGC-GUCCUaGAC---UCCGG-ACaaCGCGa -5'
24408 3' -57 NC_005264.1 + 102774 0.67 0.808628
Target:  5'- -gGCGGGccaguUCgGuGGCCUGUguUGCGCg -3'
miRNA:   3'- ggCGUCCu----AGaCuCCGGACA--ACGCGa -5'
24408 3' -57 NC_005264.1 + 148325 0.68 0.79981
Target:  5'- uUCGUAuGGUCUGAGGUUgcgUGCGCg -3'
miRNA:   3'- -GGCGUcCUAGACUCCGGacaACGCGa -5'
24408 3' -57 NC_005264.1 + 93477 0.68 0.79981
Target:  5'- aCCGCGcuGUCUGAGGCgCUGcuggcggccgGCGCg -3'
miRNA:   3'- -GGCGUccUAGACUCCG-GACaa--------CGCGa -5'
24408 3' -57 NC_005264.1 + 83036 0.68 0.772492
Target:  5'- gCCGCAGG------GGCCUcGUUGCGCa -3'
miRNA:   3'- -GGCGUCCuagacuCCGGA-CAACGCGa -5'
24408 3' -57 NC_005264.1 + 69134 0.69 0.734382
Target:  5'- gCCGCcuGAUCUGuGGCCc---GCGCUa -3'
miRNA:   3'- -GGCGucCUAGACuCCGGacaaCGCGA- -5'
24408 3' -57 NC_005264.1 + 16494 0.69 0.724614
Target:  5'- cCUGCGGGGUC-GAGGCaCgccgGCGCa -3'
miRNA:   3'- -GGCGUCCUAGaCUCCG-GacaaCGCGa -5'
24408 3' -57 NC_005264.1 + 69671 0.69 0.704849
Target:  5'- aCGC-GGcgCUGGGGCCUugguucuccgcgGUUGCGUc -3'
miRNA:   3'- gGCGuCCuaGACUCCGGA------------CAACGCGa -5'
24408 3' -57 NC_005264.1 + 66299 0.71 0.603766
Target:  5'- cCCGUAGGGUCccUGcacuCCUGUUGCGCg -3'
miRNA:   3'- -GGCGUCCUAG--ACucc-GGACAACGCGa -5'
24408 3' -57 NC_005264.1 + 75727 0.72 0.563476
Target:  5'- cCCGCGGGcgCcgGAGGCCaGUcugggUGCGUUa -3'
miRNA:   3'- -GGCGUCCuaGa-CUCCGGaCA-----ACGCGA- -5'
24408 3' -57 NC_005264.1 + 115592 0.72 0.533731
Target:  5'- uCCGgAGGAg-UGGGGCCUGcucUGCGCc -3'
miRNA:   3'- -GGCgUCCUagACUCCGGACa--ACGCGa -5'
24408 3' -57 NC_005264.1 + 135775 0.78 0.283334
Target:  5'- aCGCGGcGAUCagaGAGGCCUGggugGCGCUa -3'
miRNA:   3'- gGCGUC-CUAGa--CUCCGGACaa--CGCGA- -5'
24408 3' -57 NC_005264.1 + 106953 1.1 0.002123
Target:  5'- gCCGCAGGAUCUGAGGCCUGUUGCGCUg -3'
miRNA:   3'- -GGCGUCCUAGACUCCGGACAACGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.