miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24408 5' -58.3 NC_005264.1 + 98488 0.66 0.80987
Target:  5'- uGGGGugcuaaaguaucuGCCGGAGGCgCCgacggGGGGCCuCAGu -3'
miRNA:   3'- uUUCC-------------UGGUCUUCG-GGa----CUCCGG-GUC- -5'
24408 5' -58.3 NC_005264.1 + 144039 0.66 0.801904
Target:  5'- --cGGACCAcGAuuGGUCCaGAGGCCUc- -3'
miRNA:   3'- uuuCCUGGU-CU--UCGGGaCUCCGGGuc -5'
24408 5' -58.3 NC_005264.1 + 87998 0.66 0.783764
Target:  5'- gGGAGGuuCCAGAAGaccugcCCCUGGuGCCCAc -3'
miRNA:   3'- -UUUCCu-GGUCUUC------GGGACUcCGGGUc -5'
24408 5' -58.3 NC_005264.1 + 40711 0.66 0.774485
Target:  5'- aAGGGGGCCGGGAaucGCCCgaacGGGUCCu- -3'
miRNA:   3'- -UUUCCUGGUCUU---CGGGac--UCCGGGuc -5'
24408 5' -58.3 NC_005264.1 + 159737 0.66 0.774485
Target:  5'- aAGGGGGCCGGGAaucGCCCgaacGGGUCCu- -3'
miRNA:   3'- -UUUCCUGGUCUU---CGGGac--UCCGGGuc -5'
24408 5' -58.3 NC_005264.1 + 99065 0.66 0.76508
Target:  5'- aGAAGGAaaCCAGAgccaaGGCCgaGcgagaagauaGGGCCCGGa -3'
miRNA:   3'- -UUUCCU--GGUCU-----UCGGgaC----------UCCGGGUC- -5'
24408 5' -58.3 NC_005264.1 + 136599 0.67 0.73619
Target:  5'- gAGAGGGCCgAGGAGCUCUcuGGUCgAGa -3'
miRNA:   3'- -UUUCCUGG-UCUUCGGGAcuCCGGgUC- -5'
24408 5' -58.3 NC_005264.1 + 3006 0.69 0.594517
Target:  5'- --uGGGCCGGcggcucGGCUCUGGGGUCCGa -3'
miRNA:   3'- uuuCCUGGUCu-----UCGGGACUCCGGGUc -5'
24408 5' -58.3 NC_005264.1 + 68994 0.69 0.58435
Target:  5'- --cGGGCCAGuGGCCCgc-GGCCCu- -3'
miRNA:   3'- uuuCCUGGUCuUCGGGacuCCGGGuc -5'
24408 5' -58.3 NC_005264.1 + 27136 0.7 0.574217
Target:  5'- --uGGGCCAuGAGCCC-GAGGgCCGGc -3'
miRNA:   3'- uuuCCUGGUcUUCGGGaCUCCgGGUC- -5'
24408 5' -58.3 NC_005264.1 + 146950 0.7 0.574217
Target:  5'- cAGAGG-CUGGAuGGCgCUGAGGCCgCAGg -3'
miRNA:   3'- -UUUCCuGGUCU-UCGgGACUCCGG-GUC- -5'
24408 5' -58.3 NC_005264.1 + 102152 0.7 0.554081
Target:  5'- ---uGACCucugcGGAGGCCUUGGGaGCCCAGc -3'
miRNA:   3'- uuucCUGG-----UCUUCGGGACUC-CGGGUC- -5'
24408 5' -58.3 NC_005264.1 + 27268 0.71 0.504776
Target:  5'- -cAGGA--AGAGGCCCUGuuGGCCCAc -3'
miRNA:   3'- uuUCCUggUCUUCGGGACu-CCGGGUc -5'
24408 5' -58.3 NC_005264.1 + 119985 0.71 0.495135
Target:  5'- cGAGGACUuagaGGAAGcCCCUGGGGCggCAGg -3'
miRNA:   3'- uUUCCUGG----UCUUC-GGGACUCCGg-GUC- -5'
24408 5' -58.3 NC_005264.1 + 26947 0.71 0.495135
Target:  5'- aGAGGGuACUcGAAGUCCgccggGAGGCCCAu -3'
miRNA:   3'- -UUUCC-UGGuCUUCGGGa----CUCCGGGUc -5'
24408 5' -58.3 NC_005264.1 + 959 0.71 0.495135
Target:  5'- cGAGGACUuagaGGAAGcCCCUGGGGCggCAGg -3'
miRNA:   3'- uUUCCUGG----UCUUC-GGGACUCCGg-GUC- -5'
24408 5' -58.3 NC_005264.1 + 144839 0.73 0.395461
Target:  5'- -cAGGGUCGGggGaaguCCCUGGGGCCUAGg -3'
miRNA:   3'- uuUCCUGGUCuuC----GGGACUCCGGGUC- -5'
24408 5' -58.3 NC_005264.1 + 59903 0.74 0.346831
Target:  5'- --cGGGCCAGu-GCCCUGuGGCgCAGa -3'
miRNA:   3'- uuuCCUGGUCuuCGGGACuCCGgGUC- -5'
24408 5' -58.3 NC_005264.1 + 106989 1.06 0.002545
Target:  5'- cAAAGGACCAGAAGCCCUGAGGCCCAGu -3'
miRNA:   3'- -UUUCCUGGUCUUCGGGACUCCGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.