miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 3' -52.7 NC_005264.1 + 125529 0.66 0.97162
Target:  5'- --gUCGaGAGAAgGCGGGUGuuGCUGCg -3'
miRNA:   3'- aaaAGCgCUCUU-CGCUCGUcuCGACG- -5'
24409 3' -52.7 NC_005264.1 + 4279 0.66 0.97162
Target:  5'- ---cCGCGGGGcGGCG-GCAGAGa-GCa -3'
miRNA:   3'- aaaaGCGCUCU-UCGCuCGUCUCgaCG- -5'
24409 3' -52.7 NC_005264.1 + 19064 0.66 0.971327
Target:  5'- ---cCGCGGGAAGCGcGCuucccgcgcauagGGAGCcaggacUGCa -3'
miRNA:   3'- aaaaGCGCUCUUCGCuCG-------------UCUCG------ACG- -5'
24409 3' -52.7 NC_005264.1 + 100069 0.66 0.969832
Target:  5'- -gUUUGCGGGGccuagggcguagcauGGCGGccGCGGGGCUcaGCg -3'
miRNA:   3'- aaAAGCGCUCU---------------UCGCU--CGUCUCGA--CG- -5'
24409 3' -52.7 NC_005264.1 + 153354 0.66 0.969832
Target:  5'- ---aCGgGGGAGGCG-GCAGAcaagacgcgcgaagcGUUGCg -3'
miRNA:   3'- aaaaGCgCUCUUCGCuCGUCU---------------CGACG- -5'
24409 3' -52.7 NC_005264.1 + 158087 0.66 0.969527
Target:  5'- -gUUCGCGcggcgguccacccccGGAcgccggcucGGCGGGCAGcggcgucuggaccAGCUGCu -3'
miRNA:   3'- aaAAGCGC---------------UCU---------UCGCUCGUC-------------UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 39060 0.66 0.969527
Target:  5'- -gUUCGCGcggcgguccacccccGGAcgccggcucGGCGGGCAGcggcgucuggaccAGCUGCu -3'
miRNA:   3'- aaAAGCGC---------------UCU---------UCGCUCGUC-------------UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 151870 0.66 0.968597
Target:  5'- ---aCGUGGGggGCGucuucGCGGgcaucAGCUGUa -3'
miRNA:   3'- aaaaGCGCUCuuCGCu----CGUC-----UCGACG- -5'
24409 3' -52.7 NC_005264.1 + 119427 0.66 0.968597
Target:  5'- --cUCGCGGcuGGCGGGCGaucucGCUGCc -3'
miRNA:   3'- aaaAGCGCUcuUCGCUCGUcu---CGACG- -5'
24409 3' -52.7 NC_005264.1 + 70593 0.66 0.968597
Target:  5'- ---gCGCGcuuggcGAGGCGGGCcuucAGAGCaUGCu -3'
miRNA:   3'- aaaaGCGCu-----CUUCGCUCG----UCUCG-ACG- -5'
24409 3' -52.7 NC_005264.1 + 138995 0.66 0.968597
Target:  5'- --gUCGUGgcuacAGAcAGCGAuaGCgGGAGCUGCg -3'
miRNA:   3'- aaaAGCGC-----UCU-UCGCU--CG-UCUCGACG- -5'
24409 3' -52.7 NC_005264.1 + 84546 0.66 0.968283
Target:  5'- --gUCGCG-GAAGcCGGGCaaagaacGGAGCaGCu -3'
miRNA:   3'- aaaAGCGCuCUUC-GCUCG-------UCUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 106301 0.66 0.965352
Target:  5'- --gUCG-GAGAgcgacagcugcGGCGGGCAGGGCg-- -3'
miRNA:   3'- aaaAGCgCUCU-----------UCGCUCGUCUCGacg -5'
24409 3' -52.7 NC_005264.1 + 15766 0.67 0.954223
Target:  5'- ---gCGCGAGcguggcuccGGGCGAGCAGAGa--- -3'
miRNA:   3'- aaaaGCGCUC---------UUCGCUCGUCUCgacg -5'
24409 3' -52.7 NC_005264.1 + 121130 0.67 0.954223
Target:  5'- ---gCGCGAGAAGauguagaGGGCuacGAGCaGCa -3'
miRNA:   3'- aaaaGCGCUCUUCg------CUCGu--CUCGaCG- -5'
24409 3' -52.7 NC_005264.1 + 20071 0.67 0.954223
Target:  5'- ---cCGCGuacuGCGAGUAGAGCuUGUc -3'
miRNA:   3'- aaaaGCGCucuuCGCUCGUCUCG-ACG- -5'
24409 3' -52.7 NC_005264.1 + 13280 0.67 0.95003
Target:  5'- -gUUCGCGccagcGAGGCGGGUcguGGAGCUc- -3'
miRNA:   3'- aaAAGCGCu----CUUCGCUCG---UCUCGAcg -5'
24409 3' -52.7 NC_005264.1 + 132307 0.67 0.95003
Target:  5'- -gUUCGCGccagcGAGGCGGGUcguGGAGCUc- -3'
miRNA:   3'- aaAAGCGCu----CUUCGCUCG---UCUCGAcg -5'
24409 3' -52.7 NC_005264.1 + 139928 0.67 0.94559
Target:  5'- -cUUUGCGGGAAuacgacCGAcGCGGuGCUGCu -3'
miRNA:   3'- aaAAGCGCUCUUc-----GCU-CGUCuCGACG- -5'
24409 3' -52.7 NC_005264.1 + 133143 0.67 0.945132
Target:  5'- ---gCGCGGGAGGCGAcCGGAugacgagGCUGg -3'
miRNA:   3'- aaaaGCGCUCUUCGCUcGUCU-------CGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.