miRNA display CGI


Results 61 - 80 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 120730 0.82 0.125088
Target:  5'- cGGAGGACGGUGCCgGCgACUgCGACGa -3'
miRNA:   3'- -CCUCCUGCUACGGgCGgUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 121729 0.66 0.847786
Target:  5'- cGGAGGAgGGaGUCCagauagGCCGCCcCGGCc -3'
miRNA:   3'- -CCUCCUgCUaCGGG------CGGUGGaGCUGu -5'
24409 5' -58.6 NC_005264.1 + 122447 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 122499 0.75 0.362515
Target:  5'- cGGGGGCGAUggGCuuGCCGCCgcacgCGGCGg -3'
miRNA:   3'- cCUCCUGCUA--CGggCGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122678 0.68 0.715126
Target:  5'- ----cGCGAUGgCCGCCGUCUCGACGa -3'
miRNA:   3'- ccuccUGCUACgGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122769 0.67 0.780601
Target:  5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3'
miRNA:   3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5'
24409 5' -58.6 NC_005264.1 + 123715 0.66 0.831958
Target:  5'- -cGGGGCGAgugGCgCCGCguCCaCGACAg -3'
miRNA:   3'- ccUCCUGCUa--CG-GGCGguGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 123781 0.66 0.839961
Target:  5'- cGGGGGugGAccGCCgCGCgAaCUCGGCc -3'
miRNA:   3'- -CCUCCugCUa-CGG-GCGgUgGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 123961 0.66 0.827073
Target:  5'- aGGAGGaaggcaacugucgugGCGGUGaCgCGUCACCgacUCGGCAc -3'
miRNA:   3'- -CCUCC---------------UGCUAC-GgGCGGUGG---AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 124432 0.66 0.839961
Target:  5'- aGAGcGCG-UGCuCCGCgGCCUCGAg- -3'
miRNA:   3'- cCUCcUGCuACG-GGCGgUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 125162 0.7 0.626517
Target:  5'- gGGAGGGCGAgGgCCGCgCGCCcgUCGcGCAu -3'
miRNA:   3'- -CCUCCUGCUaCgGGCG-GUGG--AGC-UGU- -5'
24409 5' -58.6 NC_005264.1 + 127034 0.68 0.753125
Target:  5'- cGGGGccGGCaGAggcGCCCGCCACgaCGGCGc -3'
miRNA:   3'- -CCUC--CUG-CUa--CGGGCGGUGgaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 128711 0.72 0.500132
Target:  5'- gGGAGG-CGG-GCUCG-CGCCUCGACGc -3'
miRNA:   3'- -CCUCCuGCUaCGGGCgGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131233 0.83 0.121969
Target:  5'- -cAGGGCGAUGCgCGCCGCCUCGcCAg -3'
miRNA:   3'- ccUCCUGCUACGgGCGGUGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 131653 0.72 0.490815
Target:  5'- cGGucuGCGGUGCCCGCCGCCagaccguuggCGGCAc -3'
miRNA:   3'- -CCuccUGCUACGGGCGGUGGa---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 131990 0.71 0.538129
Target:  5'- --cGGGCGgcGCgCCGCCGCCgaCGACGa -3'
miRNA:   3'- ccuCCUGCuaCG-GGCGGUGGa-GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 139505 0.68 0.738088
Target:  5'- cGGGGcagaccccgcuggccGCGAUguugugGCCCGCCGCaCUCGugGc -3'
miRNA:   3'- cCUCC---------------UGCUA------CGGGCGGUG-GAGCugU- -5'
24409 5' -58.6 NC_005264.1 + 139998 0.7 0.586908
Target:  5'- gGGAGGACGAcguUGCUguaccccucuCGCUACCUacacgcucgCGACAg -3'
miRNA:   3'- -CCUCCUGCU---ACGG----------GCGGUGGA---------GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 142332 0.66 0.831148
Target:  5'- -cAGaGACGucuacgaAUGCaCCGCUACCUUGGCGu -3'
miRNA:   3'- ccUC-CUGC-------UACG-GGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 143989 0.67 0.771557
Target:  5'- -uAGGGgGGUG-CCGCCcCCUCGAUg -3'
miRNA:   3'- ccUCCUgCUACgGGCGGuGGAGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.