Results 21 - 40 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24409 | 5' | -58.6 | NC_005264.1 | + | 127034 | 0.68 | 0.753125 |
Target: 5'- cGGGGccGGCaGAggcGCCCGCCACgaCGGCGc -3' miRNA: 3'- -CCUC--CUG-CUa--CGGGCGGUGgaGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 125162 | 0.7 | 0.626517 |
Target: 5'- gGGAGGGCGAgGgCCGCgCGCCcgUCGcGCAu -3' miRNA: 3'- -CCUCCUGCUaCgGGCG-GUGG--AGC-UGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 124432 | 0.66 | 0.839961 |
Target: 5'- aGAGcGCG-UGCuCCGCgGCCUCGAg- -3' miRNA: 3'- cCUCcUGCuACG-GGCGgUGGAGCUgu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 123961 | 0.66 | 0.827073 |
Target: 5'- aGGAGGaaggcaacugucgugGCGGUGaCgCGUCACCgacUCGGCAc -3' miRNA: 3'- -CCUCC---------------UGCUAC-GgGCGGUGG---AGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 123781 | 0.66 | 0.839961 |
Target: 5'- cGGGGGugGAccGCCgCGCgAaCUCGGCc -3' miRNA: 3'- -CCUCCugCUa-CGG-GCGgUgGAGCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 123715 | 0.66 | 0.831958 |
Target: 5'- -cGGGGCGAgugGCgCCGCguCCaCGACAg -3' miRNA: 3'- ccUCCUGCUa--CG-GGCGguGGaGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 122769 | 0.67 | 0.780601 |
Target: 5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3' miRNA: 3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 122678 | 0.68 | 0.715126 |
Target: 5'- ----cGCGAUGgCCGCCGUCUCGACGa -3' miRNA: 3'- ccuccUGCUACgGGCGGUGGAGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 122499 | 0.75 | 0.362515 |
Target: 5'- cGGGGGCGAUggGCuuGCCGCCgcacgCGGCGg -3' miRNA: 3'- cCUCCUGCUA--CGggCGGUGGa----GCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 122447 | 0.66 | 0.815445 |
Target: 5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3' miRNA: 3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 121729 | 0.66 | 0.847786 |
Target: 5'- cGGAGGAgGGaGUCCagauagGCCGCCcCGGCc -3' miRNA: 3'- -CCUCCUgCUaCGGG------CGGUGGaGCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 120730 | 0.82 | 0.125088 |
Target: 5'- cGGAGGACGGUGCCgGCgACUgCGACGa -3' miRNA: 3'- -CCUCCUGCUACGGgCGgUGGaGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 120139 | 0.66 | 0.847786 |
Target: 5'- aGGAGGACGGagcGCCgGCCgGCgaUGACc -3' miRNA: 3'- -CCUCCUGCUa--CGGgCGG-UGgaGCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 119435 | 0.68 | 0.733342 |
Target: 5'- uGGcGGGCGAucucgcUGCCCagGCCGCCcacagacucacggUCGGCAu -3' miRNA: 3'- -CCuCCUGCU------ACGGG--CGGUGG-------------AGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 118228 | 0.66 | 0.839961 |
Target: 5'- --cGG-UGAUGUCCGCCACCagGAaCAa -3' miRNA: 3'- ccuCCuGCUACGGGCGGUGGagCU-GU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 118039 | 0.66 | 0.847786 |
Target: 5'- uGGAGGuuugcCGcgGCgaCCGCgGCgUCGGCAa -3' miRNA: 3'- -CCUCCu----GCuaCG--GGCGgUGgAGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 118010 | 0.68 | 0.715126 |
Target: 5'- cGGGGGcACuAUGCCCaugaGCCACCU-GACu -3' miRNA: 3'- -CCUCC-UGcUACGGG----CGGUGGAgCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 115873 | 0.66 | 0.847786 |
Target: 5'- -uGGGuucuCGA-GCCCGCCACC-CGGgGg -3' miRNA: 3'- ccUCCu---GCUaCGGGCGGUGGaGCUgU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 111631 | 0.71 | 0.577067 |
Target: 5'- cGAGGACG-UGUaCCGCCGCUauugCGACGu -3' miRNA: 3'- cCUCCUGCuACG-GGCGGUGGa---GCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 108372 | 0.66 | 0.823783 |
Target: 5'- uGGGcGACGAcgGCCCuuaCCAgCUCGGCGg -3' miRNA: 3'- cCUC-CUGCUa-CGGGc--GGUgGAGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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