miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 106585 1.11 0.001554
Target:  5'- cGGAGGACGAUGCCCGCCACCUCGACAa -3'
miRNA:   3'- -CCUCCUGCUACGGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 106507 0.7 0.636447
Target:  5'- uGGGGGGC----UCCGCCACgUCGACGc -3'
miRNA:   3'- -CCUCCUGcuacGGGCGGUGgAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 101038 0.68 0.753125
Target:  5'- ---cGGCGAUGCCCGCgGCC-CGGu- -3'
miRNA:   3'- ccucCUGCUACGGGCGgUGGaGCUgu -5'
24409 5' -58.6 NC_005264.1 + 95853 0.69 0.695692
Target:  5'- aGGGGaACGAgaaaccaggucuUGCCgUGCCGCCUgGGCAc -3'
miRNA:   3'- cCUCC-UGCU------------ACGG-GCGGUGGAgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 94599 0.68 0.715126
Target:  5'- cGAGGAaGAcaaGCCCGCCGCCggcgCGGa- -3'
miRNA:   3'- cCUCCUgCUa--CGGGCGGUGGa---GCUgu -5'
24409 5' -58.6 NC_005264.1 + 91309 0.7 0.606677
Target:  5'- -cAGGGCGAUGCCCG-UACCggaGGCGc -3'
miRNA:   3'- ccUCCUGCUACGGGCgGUGGag-CUGU- -5'
24409 5' -58.6 NC_005264.1 + 88927 0.66 0.847012
Target:  5'- uGGAGGACaagaacaGGUGCCuggcaCGCCugCUgCGAgAg -3'
miRNA:   3'- -CCUCCUG-------CUACGG-----GCGGugGA-GCUgU- -5'
24409 5' -58.6 NC_005264.1 + 82733 0.66 0.831958
Target:  5'- --cGGACc--GCUagCGCCACCUCGAUAa -3'
miRNA:   3'- ccuCCUGcuaCGG--GCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 80633 0.7 0.616591
Target:  5'- cGAGGACGAUGgaCgCGCgGCCaCGACAc -3'
miRNA:   3'- cCUCCUGCUACg-G-GCGgUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 79708 0.66 0.839961
Target:  5'- uGAGGGCaGAcGCgccuCCGCgGCCUUGGCGc -3'
miRNA:   3'- cCUCCUG-CUaCG----GGCGgUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 77832 0.66 0.850865
Target:  5'- aGAGGACaguUGCCCGauaugaugcuuaucuCCGCCaCGACGc -3'
miRNA:   3'- cCUCCUGcu-ACGGGC---------------GGUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 76654 0.7 0.616591
Target:  5'- cGAGGcCGAUG-CgGCCACCggugCGGCAg -3'
miRNA:   3'- cCUCCuGCUACgGgCGGUGGa---GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 76505 0.68 0.705438
Target:  5'- gGGGGGAauagGCgaccgucuaCCGCCGCUUCGGCGg -3'
miRNA:   3'- -CCUCCUgcuaCG---------GGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 73067 0.67 0.78952
Target:  5'- --uGGACGGaugGCCCGCgcggcaucucUACUUCGACGg -3'
miRNA:   3'- ccuCCUGCUa--CGGGCG----------GUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 68410 0.7 0.625524
Target:  5'- gGGAGGACGGgcUGCUCGCUcuggacuaccggcGCCgCGGCc -3'
miRNA:   3'- -CCUCCUGCU--ACGGGCGG-------------UGGaGCUGu -5'
24409 5' -58.6 NC_005264.1 + 61834 0.67 0.780601
Target:  5'- uGAGGACGAcccguaUCGCCAauccCCUCGGCGc -3'
miRNA:   3'- cCUCCUGCUacg---GGCGGU----GGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 55691 0.69 0.683932
Target:  5'- uGGGGAUGAacacguagcucaGCUCGCCGCCUaGACAg -3'
miRNA:   3'- cCUCCUGCUa-----------CGGGCGGUGGAgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 52907 0.66 0.815445
Target:  5'- aGGucGGCGAa--CCGCCACUUCGAgGg -3'
miRNA:   3'- -CCucCUGCUacgGGCGGUGGAGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 49904 0.66 0.815445
Target:  5'- aGGA-GAgGAUG-CCGCCGCugaagCUCGACAc -3'
miRNA:   3'- -CCUcCUgCUACgGGCGGUG-----GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 45407 0.79 0.209865
Target:  5'- uGGAGGGCGgcGCCCuGCgCGCCgCGACAg -3'
miRNA:   3'- -CCUCCUGCuaCGGG-CG-GUGGaGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.