Results 61 - 80 of 92 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24409 | 5' | -58.6 | NC_005264.1 | + | 43903 | 0.73 | 0.428071 |
Target: 5'- cGGA-GACGAUaGCgcggCCGUCGCCUCGACGu -3' miRNA: 3'- -CCUcCUGCUA-CG----GGCGGUGGAGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 41388 | 0.67 | 0.80695 |
Target: 5'- --cGGACG-UGUCCGCgGCCUCcGCu -3' miRNA: 3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 40306 | 0.67 | 0.771557 |
Target: 5'- aGGcGGACGGcgaggauccccUGCCCcCCGCCgcgugCGGCGg -3' miRNA: 3'- -CCuCCUGCU-----------ACGGGcGGUGGa----GCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 40255 | 0.68 | 0.703493 |
Target: 5'- cGGAGGAaguggcacgagaGAUGCUggaCGCCGCCgcgucgcgguUCGACGa -3' miRNA: 3'- -CCUCCUg-----------CUACGG---GCGGUGG----------AGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 38745 | 0.66 | 0.823783 |
Target: 5'- --cGGACGG-GCUgGCCGCCUugCGACc -3' miRNA: 3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 37121 | 0.67 | 0.798306 |
Target: 5'- cGAGGGCGA-GgCgGCCGUCUCGGCc -3' miRNA: 3'- cCUCCUGCUaCgGgCGGUGGAGCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 36490 | 0.66 | 0.839961 |
Target: 5'- aGGcGGcguuuucguGCGAaGCgCGCgGCCUCGACGa -3' miRNA: 3'- -CCuCC---------UGCUaCGgGCGgUGGAGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 36014 | 0.66 | 0.847786 |
Target: 5'- cGAGG-CGuUGCCCGCCAauaCUCuGAg- -3' miRNA: 3'- cCUCCuGCuACGGGCGGUg--GAG-CUgu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 34509 | 0.7 | 0.59678 |
Target: 5'- uGGGGGGCGGUGUCauaCGCCUuCGACc -3' miRNA: 3'- -CCUCCUGCUACGGgcgGUGGA-GCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 34133 | 0.68 | 0.743755 |
Target: 5'- cGAGGcGCGA-GCCCGCCucccccaagGCCUCgcuaGACGa -3' miRNA: 3'- cCUCC-UGCUaCGGGCGG---------UGGAG----CUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 33600 | 0.67 | 0.798306 |
Target: 5'- --cGGACGAgGCuuGCCGCCgcuaaaguUCGGCc -3' miRNA: 3'- ccuCCUGCUaCGggCGGUGG--------AGCUGu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 30909 | 0.68 | 0.734292 |
Target: 5'- gGGAGGacuGCGAgGCCgGgCGgCUCGACGu -3' miRNA: 3'- -CCUCC---UGCUaCGGgCgGUgGAGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 27676 | 0.66 | 0.839961 |
Target: 5'- cGAGGuACGcgGCUgGCCucuGCCUCGcCGa -3' miRNA: 3'- cCUCC-UGCuaCGGgCGG---UGGAGCuGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 22060 | 0.69 | 0.646373 |
Target: 5'- --uGGACGGUaGCgCCGCCGCCggaaGGCGg -3' miRNA: 3'- ccuCCUGCUA-CG-GGCGGUGGag--CUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 18588 | 0.66 | 0.823783 |
Target: 5'- -aAGGcaGCGA-GCCagGCCACCUCGAa- -3' miRNA: 3'- ccUCC--UGCUaCGGg-CGGUGGAGCUgu -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 16384 | 0.71 | 0.577067 |
Target: 5'- gGGAGGG-GAUGCCCGUgGCgcaUUGGCAc -3' miRNA: 3'- -CCUCCUgCUACGGGCGgUGg--AGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 16300 | 0.66 | 0.839961 |
Target: 5'- aGAGGcugGgGAUGUgCGCCGCacuCUCGACGc -3' miRNA: 3'- cCUCC---UgCUACGgGCGGUG---GAGCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 14769 | 0.68 | 0.724746 |
Target: 5'- uGGAGGGCGAccacaagaUGCUguuccgUGCCACCcUgGACGa -3' miRNA: 3'- -CCUCCUGCU--------ACGG------GCGGUGG-AgCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 12964 | 0.69 | 0.676058 |
Target: 5'- --cGGGCGgcGCgCGCCGCCgaCGACGa -3' miRNA: 3'- ccuCCUGCuaCGgGCGGUGGa-GCUGU- -5' |
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24409 | 5' | -58.6 | NC_005264.1 | + | 12206 | 0.83 | 0.121969 |
Target: 5'- -cAGGGCGAUGCgCGCCGCCUCGcCAg -3' miRNA: 3'- ccUCCUGCUACGgGCGGUGGAGCuGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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