miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 94599 0.68 0.715126
Target:  5'- cGAGGAaGAcaaGCCCGCCGCCggcgCGGa- -3'
miRNA:   3'- cCUCCUgCUa--CGGGCGGUGGa---GCUgu -5'
24409 5' -58.6 NC_005264.1 + 149935 0.68 0.715126
Target:  5'- gGGAGGacuGCGAgGCCgGgCGgCUCGACGg -3'
miRNA:   3'- -CCUCC---UGCUaCGGgCgGUgGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122678 0.68 0.715126
Target:  5'- ----cGCGAUGgCCGCCGUCUCGACGa -3'
miRNA:   3'- ccuccUGCUACgGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 159282 0.68 0.703493
Target:  5'- cGGAGGAaguggcacgagaGAUGCUggaCGCCGCCgcgucgcgguUCGACGa -3'
miRNA:   3'- -CCUCCUg-----------CUACGG---GCGGUGG----------AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 95853 0.69 0.695692
Target:  5'- aGGGGaACGAgaaaccaggucuUGCCgUGCCGCCUgGGCAc -3'
miRNA:   3'- cCUCC-UGCU------------ACGG-GCGGUGGAgCUGU- -5'
24409 5' -58.6 NC_005264.1 + 22060 0.69 0.646373
Target:  5'- --uGGACGGUaGCgCCGCCGCCggaaGGCGg -3'
miRNA:   3'- ccuCCUGCUA-CG-GGCGGUGGag--CUGU- -5'
24409 5' -58.6 NC_005264.1 + 4688 0.66 0.831958
Target:  5'- -cGGGGCGAgugGCgCCGCguCCaCGACAg -3'
miRNA:   3'- ccUCCUGCUa--CG-GGCGguGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 158397 0.66 0.823783
Target:  5'- gGGAGc-CGuauAUGCCCGCCGCC-CGuCAc -3'
miRNA:   3'- -CCUCcuGC---UACGGGCGGUGGaGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 38745 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 145675 0.66 0.818799
Target:  5'- uGGAcGACGAgcucucggauuauccUGUagCCGCCcCCUCGACGc -3'
miRNA:   3'- -CCUcCUGCU---------------ACG--GGCGGuGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 49904 0.66 0.815445
Target:  5'- aGGA-GAgGAUG-CCGCCGCugaagCUCGACAc -3'
miRNA:   3'- -CCUcCUgCUACgGGCGGUG-----GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3420 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 146263 0.66 0.831958
Target:  5'- cGGAGucauGUGCgCCGCCGCCcCGGCGc -3'
miRNA:   3'- -CCUCcugcUACG-GGCGGUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 16300 0.66 0.839961
Target:  5'- aGAGGcugGgGAUGUgCGCCGCacuCUCGACGc -3'
miRNA:   3'- cCUCC---UgCUACGgGCGGUG---GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 118228 0.66 0.839961
Target:  5'- --cGG-UGAUGUCCGCCACCagGAaCAa -3'
miRNA:   3'- ccuCCuGCUACGGGCGGUGGagCU-GU- -5'
24409 5' -58.6 NC_005264.1 + 124432 0.66 0.839961
Target:  5'- aGAGcGCG-UGCuCCGCgGCCUCGAg- -3'
miRNA:   3'- cCUCcUGCuACG-GGCGgUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 4755 0.66 0.839961
Target:  5'- cGGGGGugGAccGCCgCGCgAaCUCGGCc -3'
miRNA:   3'- -CCUCCugCUa-CGG-GCGgUgGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 27676 0.66 0.839961
Target:  5'- cGAGGuACGcgGCUgGCCucuGCCUCGcCGa -3'
miRNA:   3'- cCUCC-UGCuaCGGgCGG---UGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 115873 0.66 0.847786
Target:  5'- -uGGGuucuCGA-GCCCGCCACC-CGGgGg -3'
miRNA:   3'- ccUCCu---GCUaCGGGCGGUGGaGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 106585 1.11 0.001554
Target:  5'- cGGAGGACGAUGCCCGCCACCUCGACAa -3'
miRNA:   3'- -CCUCCUGCUACGGGCGGUGGAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.