miRNA display CGI


Results 81 - 92 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 145675 0.66 0.818799
Target:  5'- uGGAcGACGAgcucucggauuauccUGUagCCGCCcCCUCGACGc -3'
miRNA:   3'- -CCUcCUGCU---------------ACG--GGCGGuGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 49904 0.66 0.815445
Target:  5'- aGGA-GAgGAUG-CCGCCGCugaagCUCGACAc -3'
miRNA:   3'- -CCUcCUgCUACgGGCGGUG-----GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 8007 0.68 0.753125
Target:  5'- cGGGGccGGCaGAggcGCCCGCCACgaCGGCGc -3'
miRNA:   3'- -CCUC--CUG-CUa--CGGGCGGUGgaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 101038 0.68 0.753125
Target:  5'- ---cGGCGAUGCCCGCgGCC-CGGu- -3'
miRNA:   3'- ccucCUGCUACGGGCGgUGGaGCUgu -5'
24409 5' -58.6 NC_005264.1 + 40306 0.67 0.771557
Target:  5'- aGGcGGACGGcgaggauccccUGCCCcCCGCCgcgugCGGCGg -3'
miRNA:   3'- -CCuCCUGCU-----------ACGGGcGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 143989 0.67 0.771557
Target:  5'- -uAGGGgGGUG-CCGCCcCCUCGAUg -3'
miRNA:   3'- ccUCCUgCUACgGGCGGuGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 3743 0.67 0.780601
Target:  5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3'
miRNA:   3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5'
24409 5' -58.6 NC_005264.1 + 61834 0.67 0.780601
Target:  5'- uGAGGACGAcccguaUCGCCAauccCCUCGGCGc -3'
miRNA:   3'- cCUCCUGCUacg---GGCGGU----GGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 37121 0.67 0.798306
Target:  5'- cGAGGGCGA-GgCgGCCGUCUCGGCc -3'
miRNA:   3'- cCUCCUGCUaCgGgCGGUGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 41388 0.67 0.80695
Target:  5'- --cGGACG-UGUCCGCgGCCUCcGCu -3'
miRNA:   3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5'
24409 5' -58.6 NC_005264.1 + 3420 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 120139 0.66 0.847786
Target:  5'- aGGAGGACGGagcGCCgGCCgGCgaUGACc -3'
miRNA:   3'- -CCUCCUGCUa--CGGgCGG-UGgaGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.