miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 144253 0.68 0.743755
Target:  5'- cGAGGugGccugGCUCGCUGCCUUGGg- -3'
miRNA:   3'- cCUCCugCua--CGGGCGGUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 40306 0.67 0.771557
Target:  5'- aGGcGGACGGcgaggauccccUGCCCcCCGCCgcgugCGGCGg -3'
miRNA:   3'- -CCuCCUGCU-----------ACGGGcGGUGGa----GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 38745 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 4755 0.66 0.839961
Target:  5'- cGGGGGugGAccGCCgCGCgAaCUCGGCc -3'
miRNA:   3'- -CCUCCugCUa-CGG-GCGgUgGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 80633 0.7 0.616591
Target:  5'- cGAGGACGAUGgaCgCGCgGCCaCGACAc -3'
miRNA:   3'- cCUCCUGCUACg-G-GCGgUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3651 0.68 0.715126
Target:  5'- ----cGCGAUGgCCGCCGUCUCGACGa -3'
miRNA:   3'- ccuccUGCUACgGGCGGUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3743 0.67 0.780601
Target:  5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3'
miRNA:   3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5'
24409 5' -58.6 NC_005264.1 + 27676 0.66 0.839961
Target:  5'- cGAGGuACGcgGCUgGCCucuGCCUCGcCGa -3'
miRNA:   3'- cCUCC-UGCuaCGGgCGG---UGGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 118010 0.68 0.715126
Target:  5'- cGGGGGcACuAUGCCCaugaGCCACCU-GACu -3'
miRNA:   3'- -CCUCC-UGcUACGGG----CGGUGGAgCUGu -5'
24409 5' -58.6 NC_005264.1 + 115873 0.66 0.847786
Target:  5'- -uGGGuucuCGA-GCCCGCCACC-CGGgGg -3'
miRNA:   3'- ccUCCu---GCUaCGGGCGGUGGaGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 143989 0.67 0.771557
Target:  5'- -uAGGGgGGUG-CCGCCcCCUCGAUg -3'
miRNA:   3'- ccUCCUgCUACgGGCGGuGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 34133 0.68 0.743755
Target:  5'- cGAGGcGCGA-GCCCGCCucccccaagGCCUCgcuaGACGa -3'
miRNA:   3'- cCUCC-UGCUaCGGGCGG---------UGGAG----CUGU- -5'
24409 5' -58.6 NC_005264.1 + 41388 0.67 0.80695
Target:  5'- --cGGACG-UGUCCGCgGCCUCcGCu -3'
miRNA:   3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5'
24409 5' -58.6 NC_005264.1 + 145675 0.66 0.818799
Target:  5'- uGGAcGACGAgcucucggauuauccUGUagCCGCCcCCUCGACGc -3'
miRNA:   3'- -CCUcCUGCU---------------ACG--GGCGGuGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 146263 0.66 0.831958
Target:  5'- cGGAGucauGUGCgCCGCCGCCcCGGCGc -3'
miRNA:   3'- -CCUCcugcUACG-GGCGGUGGaGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 124432 0.66 0.839961
Target:  5'- aGAGcGCG-UGCuCCGCgGCCUCGAg- -3'
miRNA:   3'- cCUCcUGCuACG-GGCGgUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 4976 0.72 0.500132
Target:  5'- --cGGcACGGUGCCCGCCAUCgUCGuCGu -3'
miRNA:   3'- ccuCC-UGCUACGGGCGGUGG-AGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 111631 0.71 0.577067
Target:  5'- cGAGGACG-UGUaCCGCCGCUauugCGACGu -3'
miRNA:   3'- cCUCCUGCuACG-GGCGGUGGa---GCUGU- -5'
24409 5' -58.6 NC_005264.1 + 148204 0.69 0.676058
Target:  5'- cGAGGGaauUGAgGCUCGCCugCUCGAgAg -3'
miRNA:   3'- cCUCCU---GCUaCGGGCGGugGAGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 76505 0.68 0.705438
Target:  5'- gGGGGGAauagGCgaccgucuaCCGCCGCUUCGGCGg -3'
miRNA:   3'- -CCUCCUgcuaCG---------GGCGGUGGAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.