miRNA display CGI


Results 21 - 40 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24409 5' -58.6 NC_005264.1 + 123961 0.66 0.827073
Target:  5'- aGGAGGaaggcaacugucgugGCGGUGaCgCGUCACCgacUCGGCAc -3'
miRNA:   3'- -CCUCC---------------UGCUAC-GgGCGGUGG---AGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 158397 0.66 0.823783
Target:  5'- gGGAGc-CGuauAUGCCCGCCGCC-CGuCAc -3'
miRNA:   3'- -CCUCcuGC---UACGGGCGGUGGaGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 38745 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 18588 0.66 0.823783
Target:  5'- -aAGGcaGCGA-GCCagGCCACCUCGAa- -3'
miRNA:   3'- ccUCC--UGCUaCGGg-CGGUGGAGCUgu -5'
24409 5' -58.6 NC_005264.1 + 108372 0.66 0.823783
Target:  5'- uGGGcGACGAcgGCCCuuaCCAgCUCGGCGg -3'
miRNA:   3'- cCUC-CUGCUa-CGGGc--GGUgGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 157771 0.66 0.823783
Target:  5'- --cGGACGG-GCUgGCCGCCUugCGACc -3'
miRNA:   3'- ccuCCUGCUaCGGgCGGUGGA--GCUGu -5'
24409 5' -58.6 NC_005264.1 + 145675 0.66 0.818799
Target:  5'- uGGAcGACGAgcucucggauuauccUGUagCCGCCcCCUCGACGc -3'
miRNA:   3'- -CCUcCUGCU---------------ACG--GGCGGuGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122447 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 49904 0.66 0.815445
Target:  5'- aGGA-GAgGAUG-CCGCCGCugaagCUCGACAc -3'
miRNA:   3'- -CCUcCUgCUACgGGCGGUG-----GAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3420 0.66 0.815445
Target:  5'- gGGAgGGACGuagggccgcGCCCGCgCugCUCG-CAa -3'
miRNA:   3'- -CCU-CCUGCua-------CGGGCG-GugGAGCuGU- -5'
24409 5' -58.6 NC_005264.1 + 52907 0.66 0.815445
Target:  5'- aGGucGGCGAa--CCGCCACUUCGAgGg -3'
miRNA:   3'- -CCucCUGCUacgGGCGGUGGAGCUgU- -5'
24409 5' -58.6 NC_005264.1 + 41388 0.67 0.80695
Target:  5'- --cGGACG-UGUCCGCgGCCUCcGCu -3'
miRNA:   3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5'
24409 5' -58.6 NC_005264.1 + 160415 0.67 0.80695
Target:  5'- --cGGACG-UGUCCGCgGCCUCcGCu -3'
miRNA:   3'- ccuCCUGCuACGGGCGgUGGAGcUGu -5'
24409 5' -58.6 NC_005264.1 + 156148 0.67 0.798306
Target:  5'- cGAGGGCGA-GgCgGCCGUCUCGGCc -3'
miRNA:   3'- cCUCCUGCUaCgGgCGGUGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 33600 0.67 0.798306
Target:  5'- --cGGACGAgGCuuGCCGCCgcuaaaguUCGGCc -3'
miRNA:   3'- ccuCCUGCUaCGggCGGUGG--------AGCUGu -5'
24409 5' -58.6 NC_005264.1 + 37121 0.67 0.798306
Target:  5'- cGAGGGCGA-GgCgGCCGUCUCGGCc -3'
miRNA:   3'- cCUCCUGCUaCgGgCGGUGGAGCUGu -5'
24409 5' -58.6 NC_005264.1 + 73067 0.67 0.78952
Target:  5'- --uGGACGGaugGCCCGCgcggcaucucUACUUCGACGg -3'
miRNA:   3'- ccuCCUGCUa--CGGGCG----------GUGGAGCUGU- -5'
24409 5' -58.6 NC_005264.1 + 122769 0.67 0.780601
Target:  5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3'
miRNA:   3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5'
24409 5' -58.6 NC_005264.1 + 3743 0.67 0.780601
Target:  5'- cGAGGAgCGggGCCUcuuGCCGCCggGGCGc -3'
miRNA:   3'- cCUCCU-GCuaCGGG---CGGUGGagCUGU- -5'
24409 5' -58.6 NC_005264.1 + 61834 0.67 0.780601
Target:  5'- uGAGGACGAcccguaUCGCCAauccCCUCGGCGc -3'
miRNA:   3'- cCUCCUGCUacg---GGCGGU----GGAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.