miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24410 3' -62 NC_005264.1 + 122651 0.65 0.710901
Target:  5'- cGCGAGgGCGGGCGcgcugacauucgucGCGAuGGccgccguCUCGa -3'
miRNA:   3'- uCGCUCgCGCCCGC--------------UGCUcCCu------GAGC- -5'
24410 3' -62 NC_005264.1 + 3624 0.65 0.710901
Target:  5'- cGCGAGgGCGGGCGcgcugacauucgucGCGAuGGccgccguCUCGa -3'
miRNA:   3'- uCGCUCgCGCCCGC--------------UGCUcCCu------GAGC- -5'
24410 3' -62 NC_005264.1 + 35983 0.66 0.708056
Target:  5'- gAGgGGGCGCGGagagcgaaacgcgcaGCGACGAGGcGuugcccgccaauACUCu -3'
miRNA:   3'- -UCgCUCGCGCC---------------CGCUGCUCC-C------------UGAGc -5'
24410 3' -62 NC_005264.1 + 58711 0.66 0.704255
Target:  5'- cGCGuuuacuAG-GCGGGCGGCcaccaGGGGGACgUCGc -3'
miRNA:   3'- uCGC------UCgCGCCCGCUG-----CUCCCUG-AGC- -5'
24410 3' -62 NC_005264.1 + 13288 0.66 0.704255
Target:  5'- cAGCGAG-GCGGGuCGugGAGcuccccggaGGACg-- -3'
miRNA:   3'- -UCGCUCgCGCCC-GCugCUC---------CCUGagc -5'
24410 3' -62 NC_005264.1 + 56924 0.66 0.704255
Target:  5'- cGGCGuacGUGCGuGGCGcACGGGGcGACg-- -3'
miRNA:   3'- -UCGCu--CGCGC-CCGC-UGCUCC-CUGagc -5'
24410 3' -62 NC_005264.1 + 132315 0.66 0.704255
Target:  5'- cAGCGAG-GCGGGuCGugGAGcuccccggaGGACg-- -3'
miRNA:   3'- -UCGCUCgCGCCC-GCugCUC---------CCUGagc -5'
24410 3' -62 NC_005264.1 + 122303 0.66 0.703303
Target:  5'- cGC-AGCGCcacgucccuGGGCGACGgggagugAGGGGCUUc -3'
miRNA:   3'- uCGcUCGCG---------CCCGCUGC-------UCCCUGAGc -5'
24410 3' -62 NC_005264.1 + 3276 0.66 0.703303
Target:  5'- cGC-AGCGCcacgucccuGGGCGACGgggagugAGGGGCUUc -3'
miRNA:   3'- uCGcUCGCG---------CCCGCUGC-------UCCCUGAGc -5'
24410 3' -62 NC_005264.1 + 95476 0.66 0.690884
Target:  5'- cAGCGAGCGCGGGCGcuACGuuuuccgccCUCu -3'
miRNA:   3'- -UCGCUCGCGCCCGC--UGCucccu----GAGc -5'
24410 3' -62 NC_005264.1 + 60275 0.66 0.685126
Target:  5'- cGGUGAGCGCcgcgucGGGCauGACGuacucGGAUUCGg -3'
miRNA:   3'- -UCGCUCGCG------CCCG--CUGCuc---CCUGAGC- -5'
24410 3' -62 NC_005264.1 + 123517 0.66 0.675498
Target:  5'- cGCGAGgguCGCGaGCGGagGGGGGACUgGg -3'
miRNA:   3'- uCGCUC---GCGCcCGCUg-CUCCCUGAgC- -5'
24410 3' -62 NC_005264.1 + 4490 0.66 0.675498
Target:  5'- cGCGAGgguCGCGaGCGGagGGGGGACUgGg -3'
miRNA:   3'- uCGCUC---GCGCcCGCUg-CUCCCUGAgC- -5'
24410 3' -62 NC_005264.1 + 48394 0.66 0.674534
Target:  5'- --gGGGCGuCGGGCGGCGgccaggagcggguGGGGGCa-- -3'
miRNA:   3'- ucgCUCGC-GCCCGCUGC-------------UCCCUGagc -5'
24410 3' -62 NC_005264.1 + 5306 0.66 0.665839
Target:  5'- cGUGGG-GCGGGCGACuGGcGGGAgUaCGg -3'
miRNA:   3'- uCGCUCgCGCCCGCUG-CU-CCCUgA-GC- -5'
24410 3' -62 NC_005264.1 + 124333 0.66 0.665839
Target:  5'- cGUGGG-GCGGGCGACuGGcGGGAgUaCGg -3'
miRNA:   3'- uCGCUCgCGCCCGCUG-CU-CCCUgA-GC- -5'
24410 3' -62 NC_005264.1 + 109088 0.66 0.664871
Target:  5'- uGGCGAagacgaggacgGCGCcggagacGGGCacGACGAGacGGACUCGu -3'
miRNA:   3'- -UCGCU-----------CGCG-------CCCG--CUGCUC--CCUGAGC- -5'
24410 3' -62 NC_005264.1 + 30103 0.66 0.656155
Target:  5'- cGCGAGUcgagauGCGGGCGGCGcGGcAC-CGa -3'
miRNA:   3'- uCGCUCG------CGCCCGCUGCuCCcUGaGC- -5'
24410 3' -62 NC_005264.1 + 152833 0.66 0.656155
Target:  5'- -aCG-GCGCGGGCuACGGGgcucgucgaGGGCUCGu -3'
miRNA:   3'- ucGCuCGCGCCCGcUGCUC---------CCUGAGC- -5'
24410 3' -62 NC_005264.1 + 78686 0.66 0.656155
Target:  5'- cGGCGcGCGCGcuGCGACcacuucccGGGGCUCGc -3'
miRNA:   3'- -UCGCuCGCGCc-CGCUGcu------CCCUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.