miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24410 3' -62 NC_005264.1 + 2512 0.67 0.600834
Target:  5'- cGCGAcuucaGCGCGGGgggcgacuucccgaGACGGGGGuugcuguACUCGg -3'
miRNA:   3'- uCGCU-----CGCGCCCg-------------CUGCUCCC-------UGAGC- -5'
24410 3' -62 NC_005264.1 + 2887 0.68 0.559477
Target:  5'- --gGGGCGCGGcGCGGCGGGgaGGGCgacggCGa -3'
miRNA:   3'- ucgCUCGCGCC-CGCUGCUC--CCUGa----GC- -5'
24410 3' -62 NC_005264.1 + 3276 0.66 0.703303
Target:  5'- cGC-AGCGCcacgucccuGGGCGACGgggagugAGGGGCUUc -3'
miRNA:   3'- uCGcUCGCG---------CCCGCUGC-------UCCCUGAGc -5'
24410 3' -62 NC_005264.1 + 3348 0.68 0.565208
Target:  5'- uGGCGAGggucuuuCGCuccgcuccgucuggGGGCGGCGAGGGcuuCUCc -3'
miRNA:   3'- -UCGCUC-------GCG--------------CCCGCUGCUCCCu--GAGc -5'
24410 3' -62 NC_005264.1 + 3618 0.68 0.549964
Target:  5'- cGGUGGGCGCuguGGGCGGggUGGGGGuuUCu -3'
miRNA:   3'- -UCGCUCGCG---CCCGCU--GCUCCCugAGc -5'
24410 3' -62 NC_005264.1 + 3624 0.65 0.710901
Target:  5'- cGCGAGgGCGGGCGcgcugacauucgucGCGAuGGccgccguCUCGa -3'
miRNA:   3'- uCGCUCgCGCCCGC--------------UGCUcCCu------GAGC- -5'
24410 3' -62 NC_005264.1 + 4490 0.66 0.675498
Target:  5'- cGCGAGgguCGCGaGCGGagGGGGGACUgGg -3'
miRNA:   3'- uCGCUC---GCGCcCGCUg-CUCCCUGAgC- -5'
24410 3' -62 NC_005264.1 + 5268 0.68 0.549964
Target:  5'- aGGCGAGuCGCGGcCgGACGGcGGGGCggCGg -3'
miRNA:   3'- -UCGCUC-GCGCCcG-CUGCU-CCCUGa-GC- -5'
24410 3' -62 NC_005264.1 + 5306 0.66 0.665839
Target:  5'- cGUGGG-GCGGGCGACuGGcGGGAgUaCGg -3'
miRNA:   3'- uCGCUCgCGCCCGCUG-CU-CCCUgA-GC- -5'
24410 3' -62 NC_005264.1 + 8077 0.7 0.476057
Target:  5'- cAGuCGGGCaCGGGCGGCGuaaacAGGGACa-- -3'
miRNA:   3'- -UC-GCUCGcGCCCGCUGC-----UCCCUGagc -5'
24410 3' -62 NC_005264.1 + 8291 0.73 0.323861
Target:  5'- aGGCGccCGUGGGCGACGGGGGcACcugCGc -3'
miRNA:   3'- -UCGCucGCGCCCGCUGCUCCC-UGa--GC- -5'
24410 3' -62 NC_005264.1 + 9506 0.71 0.415664
Target:  5'- cAGCGucaGGCGCGGcGCccuCGAGGGGCccUCGa -3'
miRNA:   3'- -UCGC---UCGCGCC-CGcu-GCUCCCUG--AGC- -5'
24410 3' -62 NC_005264.1 + 10373 0.72 0.3678
Target:  5'- cGCGAGCagcugucCGGGCGACGAcGGGGagggaUCGu -3'
miRNA:   3'- uCGCUCGc------GCCCGCUGCU-CCCUg----AGC- -5'
24410 3' -62 NC_005264.1 + 13288 0.66 0.704255
Target:  5'- cAGCGAG-GCGGGuCGugGAGcuccccggaGGACg-- -3'
miRNA:   3'- -UCGCUCgCGCCC-GCugCUC---------CCUGagc -5'
24410 3' -62 NC_005264.1 + 13453 0.69 0.485042
Target:  5'- cGGCG-GCGCcgaagGGGCuccuGCG-GGGACUCGg -3'
miRNA:   3'- -UCGCuCGCG-----CCCGc---UGCuCCCUGAGC- -5'
24410 3' -62 NC_005264.1 + 13561 0.7 0.440984
Target:  5'- gAGCG-GCGCGGGCGggACcGGGGAagggCGg -3'
miRNA:   3'- -UCGCuCGCGCCCGC--UGcUCCCUga--GC- -5'
24410 3' -62 NC_005264.1 + 16559 0.67 0.636742
Target:  5'- cAGCGcG-GUGGGCGGCGccGGGGCggCGg -3'
miRNA:   3'- -UCGCuCgCGCCCGCUGCu-CCCUGa-GC- -5'
24410 3' -62 NC_005264.1 + 16646 0.67 0.607615
Target:  5'- uGCGucucuGGUGCGGaGCG-CGAGGGAUUg- -3'
miRNA:   3'- uCGC-----UCGCGCC-CGCuGCUCCCUGAgc -5'
24410 3' -62 NC_005264.1 + 19420 0.69 0.485042
Target:  5'- aGGCGAgGCGcCGGGUGugGccgcGGGGCgCGg -3'
miRNA:   3'- -UCGCU-CGC-GCCCGCugCu---CCCUGaGC- -5'
24410 3' -62 NC_005264.1 + 22759 0.73 0.296808
Target:  5'- aAGCGAuaGCgGCGGGCaAUGAGGGGCgCGg -3'
miRNA:   3'- -UCGCU--CG-CGCCCGcUGCUCCCUGaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.