miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24410 3' -62 NC_005264.1 + 37372 0.68 0.559477
Target:  5'- gAGCGAGCcuccgaGCaGGGCGcgGCaGAGGGAC-CGc -3'
miRNA:   3'- -UCGCUCG------CG-CCCGC--UG-CUCCCUGaGC- -5'
24410 3' -62 NC_005264.1 + 153290 0.7 0.470707
Target:  5'- uAGCGAgGCGCGGGCGacgcgucgaagaguaAguuCGAGGGcccCUCGa -3'
miRNA:   3'- -UCGCU-CGCGCCCGC---------------U---GCUCCCu--GAGC- -5'
24410 3' -62 NC_005264.1 + 127104 0.7 0.476057
Target:  5'- cAGuCGGGCaCGGGCGGCGuaaacAGGGACa-- -3'
miRNA:   3'- -UC-GCUCGcGCCCGCUGC-----UCCCUGagc -5'
24410 3' -62 NC_005264.1 + 19420 0.69 0.485042
Target:  5'- aGGCGAgGCGcCGGGUGugGccgcGGGGCgCGg -3'
miRNA:   3'- -UCGCU-CGC-GCCCGCugCu---CCCUGaGC- -5'
24410 3' -62 NC_005264.1 + 57492 0.69 0.485042
Target:  5'- cGGCGAagaugcuggcGCGCGcGGCGGCGAGa-GCUCa -3'
miRNA:   3'- -UCGCU----------CGCGC-CCGCUGCUCccUGAGc -5'
24410 3' -62 NC_005264.1 + 132480 0.69 0.485042
Target:  5'- cGGCG-GCGCcgaagGGGCuccuGCG-GGGACUCGg -3'
miRNA:   3'- -UCGCuCGCG-----CCCGc---UGCuCCCUGAGC- -5'
24410 3' -62 NC_005264.1 + 3618 0.68 0.549964
Target:  5'- cGGUGGGCGCuguGGGCGGggUGGGGGuuUCu -3'
miRNA:   3'- -UCGCUCGCG---CCCGCU--GCUCCCugAGc -5'
24410 3' -62 NC_005264.1 + 124295 0.68 0.549964
Target:  5'- aGGCGAGuCGCGGcCgGACGGcGGGGCggCGg -3'
miRNA:   3'- -UCGCUC-GCGCCcG-CUGCU-CCCUGa-GC- -5'
24410 3' -62 NC_005264.1 + 121913 0.68 0.559477
Target:  5'- --gGGGCGCGGcGCGGCGGGgaGGGCgacggCGa -3'
miRNA:   3'- ucgCUCGCGCC-CGCUGCUC--CCUGa----GC- -5'
24410 3' -62 NC_005264.1 + 114146 0.7 0.449617
Target:  5'- cGCGAGCGaccGCGACGAGcaGACUCGc -3'
miRNA:   3'- uCGCUCGCgccCGCUGCUCc-CUGAGC- -5'
24410 3' -62 NC_005264.1 + 162224 0.7 0.449617
Target:  5'- uGCGA-CGCGGGcCGGCGGGGGGg--- -3'
miRNA:   3'- uCGCUcGCGCCC-GCUGCUCCCUgagc -5'
24410 3' -62 NC_005264.1 + 132588 0.7 0.440984
Target:  5'- gAGCG-GCGCGGGCGggACcGGGGAagggCGg -3'
miRNA:   3'- -UCGCuCGCGCCCGC--UGcUCCCUga--GC- -5'
24410 3' -62 NC_005264.1 + 22759 0.73 0.296808
Target:  5'- aAGCGAuaGCgGCGGGCaAUGAGGGGCgCGg -3'
miRNA:   3'- -UCGCU--CG-CGCCCGcUGCUCCCUGaGC- -5'
24410 3' -62 NC_005264.1 + 127318 0.73 0.323861
Target:  5'- aGGCGccCGUGGGCGACGGGGGcACcugCGc -3'
miRNA:   3'- -UCGCucGCGCCCGCUGCUCCC-UGa--GC- -5'
24410 3' -62 NC_005264.1 + 129400 0.72 0.3678
Target:  5'- cGCGAGCagcugucCGGGCGACGAcGGGGagggaUCGu -3'
miRNA:   3'- uCGCUCGc------GCCCGCUGCU-CCCUg----AGC- -5'
24410 3' -62 NC_005264.1 + 116436 0.71 0.399288
Target:  5'- gGGCGucuggccGCGgGGGCGACGAucGGGGCg-- -3'
miRNA:   3'- -UCGCu------CGCgCCCGCUGCU--CCCUGagc -5'
24410 3' -62 NC_005264.1 + 158249 0.71 0.399288
Target:  5'- cGCG-GCGCuGGCGGgGAGGGccugcguucccgGCUCGg -3'
miRNA:   3'- uCGCuCGCGcCCGCUgCUCCC------------UGAGC- -5'
24410 3' -62 NC_005264.1 + 152688 0.71 0.415664
Target:  5'- aAGCGGGgGCGGGUaugaaucuggGGCgGAGGcuGACUCGa -3'
miRNA:   3'- -UCGCUCgCGCCCG----------CUG-CUCC--CUGAGC- -5'
24410 3' -62 NC_005264.1 + 128533 0.71 0.415664
Target:  5'- cAGCGucaGGCGCGGcGCccuCGAGGGGCccUCGa -3'
miRNA:   3'- -UCGC---UCGCGCC-CGcu-GCUCCCUG--AGC- -5'
24410 3' -62 NC_005264.1 + 79224 0.7 0.440984
Target:  5'- uGCGuGCagGC-GGCGGCGGGGGugUCu -3'
miRNA:   3'- uCGCuCG--CGcCCGCUGCUCCCugAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.