Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 11685 | 0.66 | 0.98363 |
Target: 5'- -cCGUUAguuUCUcguuugGCGUCUCCGCcaUGCCu -3' miRNA: 3'- ucGUAAU---AGGa-----CGCAGAGGCGa-ACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 142502 | 0.66 | 0.98363 |
Target: 5'- uGGCAcggc---GCGUUUCCuGCUUGCCg -3' miRNA: 3'- -UCGUaauaggaCGCAGAGG-CGAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 61054 | 0.66 | 0.981621 |
Target: 5'- cGGCA---UCgaGCGUCUCgGCUccguucaggGCCg -3' miRNA: 3'- -UCGUaauAGgaCGCAGAGgCGAa--------CGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 129574 | 0.66 | 0.977057 |
Target: 5'- uGGCAccgAUCUUGCGcgCUCUGCagGCg -3' miRNA: 3'- -UCGUaa-UAGGACGCa-GAGGCGaaCGg -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 128835 | 0.66 | 0.977057 |
Target: 5'- cGCGUcGUCau-CGUCUCCGgcguCUUGCCc -3' miRNA: 3'- uCGUAaUAGgacGCAGAGGC----GAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 33866 | 0.66 | 0.974485 |
Target: 5'- cGGCA--GUCCcucgccgGCGUCUCUGCUUcgaaCCu -3' miRNA: 3'- -UCGUaaUAGGa------CGCAGAGGCGAAc---GG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 152892 | 0.66 | 0.974485 |
Target: 5'- cGGCA--GUCCcucgccgGCGUCUCUGCUUcgaaCCu -3' miRNA: 3'- -UCGUaaUAGGa------CGCAGAGGCGAAc---GG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 59313 | 0.66 | 0.974216 |
Target: 5'- cGCA-UAUCCgcucgagucucucUGCGuUCUCCcGCgUGCCa -3' miRNA: 3'- uCGUaAUAGG-------------ACGC-AGAGG-CGaACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 179 | 0.67 | 0.972844 |
Target: 5'- aGGCAaaugCCUGCGUCUCC-CUagaaugggauuauucUGCg -3' miRNA: 3'- -UCGUaauaGGACGCAGAGGcGA---------------ACGg -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 90545 | 0.67 | 0.971709 |
Target: 5'- uGUGUUAUCgCaccGCGUCUCCuCgUUGCCg -3' miRNA: 3'- uCGUAAUAG-Ga--CGCAGAGGcG-AACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 157950 | 0.67 | 0.971709 |
Target: 5'- cAGCGUgg-CCUcgaacuccGCGUg-UCGCUUGCCg -3' miRNA: 3'- -UCGUAauaGGA--------CGCAgaGGCGAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 80464 | 0.67 | 0.971709 |
Target: 5'- cAGCGguggUgUGCGaagugCUCCGCUUcGCCg -3' miRNA: 3'- -UCGUaauaGgACGCa----GAGGCGAA-CGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 29963 | 0.67 | 0.971709 |
Target: 5'- cAGCAUgccaaUGUCC-GCGUCccuggCCGCUgGCa -3' miRNA: 3'- -UCGUA-----AUAGGaCGCAGa----GGCGAaCGg -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 126354 | 0.67 | 0.968723 |
Target: 5'- cGCGggagAUCCcGCGUCUUCGUccuccGCCu -3' miRNA: 3'- uCGUaa--UAGGaCGCAGAGGCGaa---CGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 7327 | 0.67 | 0.968723 |
Target: 5'- cGCGggagAUCCcGCGUCUUCGUccuccGCCu -3' miRNA: 3'- uCGUaa--UAGGaCGCAGAGGCGaa---CGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 33479 | 0.67 | 0.965519 |
Target: 5'- gAGCAUUuUCCU-CGUUcCgCGCUUGCUc -3' miRNA: 3'- -UCGUAAuAGGAcGCAGaG-GCGAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 152506 | 0.67 | 0.965519 |
Target: 5'- gAGCAUUuUCCU-CGUUcCgCGCUUGCUc -3' miRNA: 3'- -UCGUAAuAGGAcGCAGaG-GCGAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 77153 | 0.67 | 0.965519 |
Target: 5'- -aCAUg--CCgaccGCGaaCUCCGCUUGCCa -3' miRNA: 3'- ucGUAauaGGa---CGCa-GAGGCGAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 82717 | 0.67 | 0.962091 |
Target: 5'- cGCAUa--CUUGC-UCUgCGCUUGCCc -3' miRNA: 3'- uCGUAauaGGACGcAGAgGCGAACGG- -5' |
|||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 40788 | 0.67 | 0.958433 |
Target: 5'- cGCGgcg-CCgagaGCGgagCCGCUUGCCg -3' miRNA: 3'- uCGUaauaGGa---CGCagaGGCGAACGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home