Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24410 | 5' | -52.5 | NC_005264.1 | + | 105897 | 1.11 | 0.004216 |
Target: 5'- cAGCAUUAUCCUGCGUCUCCGCUUGCCc -3' miRNA: 3'- -UCGUAAUAGGACGCAGAGGCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 5423 | 0.72 | 0.77995 |
Target: 5'- cGGCAUcUGUCUcgGCGUCgCCGCUcucGCCg -3' miRNA: 3'- -UCGUA-AUAGGa-CGCAGaGGCGAa--CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 108466 | 0.72 | 0.77995 |
Target: 5'- cGCAUUccUCUGCGUCcucgUCCGCUUcGCUg -3' miRNA: 3'- uCGUAAuaGGACGCAG----AGGCGAA-CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 124450 | 0.72 | 0.77995 |
Target: 5'- cGGCAUcUGUCUcgGCGUCgCCGCUcucGCCg -3' miRNA: 3'- -UCGUA-AUAGGa-CGCAGaGGCGAa--CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 56808 | 0.72 | 0.78939 |
Target: 5'- uGCuUUGUCCUGCG-CUgCGCggcgGCCc -3' miRNA: 3'- uCGuAAUAGGACGCaGAgGCGaa--CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 6139 | 0.71 | 0.842577 |
Target: 5'- aAGCAccgcccGUCCUGgGUCUCgCGCggGCUg -3' miRNA: 3'- -UCGUaa----UAGGACgCAGAG-GCGaaCGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 42543 | 0.7 | 0.874128 |
Target: 5'- cGCAgcuUCCgcGCGUCUUCGCgccggcagccUUGCCg -3' miRNA: 3'- uCGUaauAGGa-CGCAGAGGCG----------AACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 55413 | 0.7 | 0.880738 |
Target: 5'- -aCAUUGUCCaGCGcaccaagagaaacUCUCCGUucUUGCCa -3' miRNA: 3'- ucGUAAUAGGaCGC-------------AGAGGCG--AACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 98342 | 0.7 | 0.881462 |
Target: 5'- cAGCGcgGUCCagGCGacUCUCucggcgCGCUUGCCg -3' miRNA: 3'- -UCGUaaUAGGa-CGC--AGAG------GCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 23089 | 0.69 | 0.908417 |
Target: 5'- cGGCAU-GUCCcGCGUUgucugCCGCccGCCu -3' miRNA: 3'- -UCGUAaUAGGaCGCAGa----GGCGaaCGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 62395 | 0.68 | 0.95454 |
Target: 5'- gGGcCAUUGaCCUGCGccCUCCGCUU-CUa -3' miRNA: 3'- -UC-GUAAUaGGACGCa-GAGGCGAAcGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 40788 | 0.67 | 0.958433 |
Target: 5'- cGCGgcg-CCgagaGCGgagCCGCUUGCCg -3' miRNA: 3'- uCGUaauaGGa---CGCagaGGCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 51788 | 0.67 | 0.958433 |
Target: 5'- cGGCAcuucGUCCgGCGagUCCGCgcgaGCCa -3' miRNA: 3'- -UCGUaa--UAGGaCGCagAGGCGaa--CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 82717 | 0.67 | 0.962091 |
Target: 5'- cGCAUa--CUUGC-UCUgCGCUUGCCc -3' miRNA: 3'- uCGUAauaGGACGcAGAgGCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 33479 | 0.67 | 0.965519 |
Target: 5'- gAGCAUUuUCCU-CGUUcCgCGCUUGCUc -3' miRNA: 3'- -UCGUAAuAGGAcGCAGaG-GCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 77153 | 0.67 | 0.965519 |
Target: 5'- -aCAUg--CCgaccGCGaaCUCCGCUUGCCa -3' miRNA: 3'- ucGUAauaGGa---CGCa-GAGGCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 152506 | 0.67 | 0.965519 |
Target: 5'- gAGCAUUuUCCU-CGUUcCgCGCUUGCUc -3' miRNA: 3'- -UCGUAAuAGGAcGCAGaG-GCGAACGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 7327 | 0.67 | 0.968723 |
Target: 5'- cGCGggagAUCCcGCGUCUUCGUccuccGCCu -3' miRNA: 3'- uCGUaa--UAGGaCGCAGAGGCGaa---CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 126354 | 0.67 | 0.968723 |
Target: 5'- cGCGggagAUCCcGCGUCUUCGUccuccGCCu -3' miRNA: 3'- uCGUaa--UAGGaCGCAGAGGCGaa---CGG- -5' |
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24410 | 5' | -52.5 | NC_005264.1 | + | 29963 | 0.67 | 0.971709 |
Target: 5'- cAGCAUgccaaUGUCC-GCGUCccuggCCGCUgGCa -3' miRNA: 3'- -UCGUA-----AUAGGaCGCAGa----GGCGAaCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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