miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24410 5' -52.5 NC_005264.1 + 40788 0.67 0.958433
Target:  5'- cGCGgcg-CCgagaGCGgagCCGCUUGCCg -3'
miRNA:   3'- uCGUaauaGGa---CGCagaGGCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 62395 0.68 0.95454
Target:  5'- gGGcCAUUGaCCUGCGccCUCCGCUU-CUa -3'
miRNA:   3'- -UC-GUAAUaGGACGCa-GAGGCGAAcGG- -5'
24410 5' -52.5 NC_005264.1 + 23089 0.69 0.908417
Target:  5'- cGGCAU-GUCCcGCGUUgucugCCGCccGCCu -3'
miRNA:   3'- -UCGUAaUAGGaCGCAGa----GGCGaaCGG- -5'
24410 5' -52.5 NC_005264.1 + 98342 0.7 0.881462
Target:  5'- cAGCGcgGUCCagGCGacUCUCucggcgCGCUUGCCg -3'
miRNA:   3'- -UCGUaaUAGGa-CGC--AGAG------GCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 55413 0.7 0.880738
Target:  5'- -aCAUUGUCCaGCGcaccaagagaaacUCUCCGUucUUGCCa -3'
miRNA:   3'- ucGUAAUAGGaCGC-------------AGAGGCG--AACGG- -5'
24410 5' -52.5 NC_005264.1 + 42543 0.7 0.874128
Target:  5'- cGCAgcuUCCgcGCGUCUUCGCgccggcagccUUGCCg -3'
miRNA:   3'- uCGUaauAGGa-CGCAGAGGCG----------AACGG- -5'
24410 5' -52.5 NC_005264.1 + 6139 0.71 0.842577
Target:  5'- aAGCAccgcccGUCCUGgGUCUCgCGCggGCUg -3'
miRNA:   3'- -UCGUaa----UAGGACgCAGAG-GCGaaCGG- -5'
24410 5' -52.5 NC_005264.1 + 56808 0.72 0.78939
Target:  5'- uGCuUUGUCCUGCG-CUgCGCggcgGCCc -3'
miRNA:   3'- uCGuAAUAGGACGCaGAgGCGaa--CGG- -5'
24410 5' -52.5 NC_005264.1 + 5423 0.72 0.77995
Target:  5'- cGGCAUcUGUCUcgGCGUCgCCGCUcucGCCg -3'
miRNA:   3'- -UCGUA-AUAGGa-CGCAGaGGCGAa--CGG- -5'
24410 5' -52.5 NC_005264.1 + 108466 0.72 0.77995
Target:  5'- cGCAUUccUCUGCGUCcucgUCCGCUUcGCUg -3'
miRNA:   3'- uCGUAAuaGGACGCAG----AGGCGAA-CGG- -5'
24410 5' -52.5 NC_005264.1 + 124450 0.72 0.77995
Target:  5'- cGGCAUcUGUCUcgGCGUCgCCGCUcucGCCg -3'
miRNA:   3'- -UCGUA-AUAGGa-CGCAGaGGCGAa--CGG- -5'
24410 5' -52.5 NC_005264.1 + 105897 1.11 0.004216
Target:  5'- cAGCAUUAUCCUGCGUCUCCGCUUGCCc -3'
miRNA:   3'- -UCGUAAUAGGACGCAGAGGCGAACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.