miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24410 5' -52.5 NC_005264.1 + 157950 0.67 0.971709
Target:  5'- cAGCGUgg-CCUcgaacuccGCGUg-UCGCUUGCCg -3'
miRNA:   3'- -UCGUAauaGGA--------CGCAgaGGCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 152892 0.66 0.974485
Target:  5'- cGGCA--GUCCcucgccgGCGUCUCUGCUUcgaaCCu -3'
miRNA:   3'- -UCGUaaUAGGa------CGCAGAGGCGAAc---GG- -5'
24410 5' -52.5 NC_005264.1 + 152506 0.67 0.965519
Target:  5'- gAGCAUUuUCCU-CGUUcCgCGCUUGCUc -3'
miRNA:   3'- -UCGUAAuAGGAcGCAGaG-GCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 142502 0.66 0.98363
Target:  5'- uGGCAcggc---GCGUUUCCuGCUUGCCg -3'
miRNA:   3'- -UCGUaauaggaCGCAGAGG-CGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 129574 0.66 0.977057
Target:  5'- uGGCAccgAUCUUGCGcgCUCUGCagGCg -3'
miRNA:   3'- -UCGUaa-UAGGACGCa-GAGGCGaaCGg -5'
24410 5' -52.5 NC_005264.1 + 128835 0.66 0.977057
Target:  5'- cGCGUcGUCau-CGUCUCCGgcguCUUGCCc -3'
miRNA:   3'- uCGUAaUAGgacGCAGAGGC----GAACGG- -5'
24410 5' -52.5 NC_005264.1 + 126354 0.67 0.968723
Target:  5'- cGCGggagAUCCcGCGUCUUCGUccuccGCCu -3'
miRNA:   3'- uCGUaa--UAGGaCGCAGAGGCGaa---CGG- -5'
24410 5' -52.5 NC_005264.1 + 124450 0.72 0.77995
Target:  5'- cGGCAUcUGUCUcgGCGUCgCCGCUcucGCCg -3'
miRNA:   3'- -UCGUA-AUAGGa-CGCAGaGGCGAa--CGG- -5'
24410 5' -52.5 NC_005264.1 + 108466 0.72 0.77995
Target:  5'- cGCAUUccUCUGCGUCcucgUCCGCUUcGCUg -3'
miRNA:   3'- uCGUAAuaGGACGCAG----AGGCGAA-CGG- -5'
24410 5' -52.5 NC_005264.1 + 105897 1.11 0.004216
Target:  5'- cAGCAUUAUCCUGCGUCUCCGCUUGCCc -3'
miRNA:   3'- -UCGUAAUAGGACGCAGAGGCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 98342 0.7 0.881462
Target:  5'- cAGCGcgGUCCagGCGacUCUCucggcgCGCUUGCCg -3'
miRNA:   3'- -UCGUaaUAGGa-CGC--AGAG------GCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 90545 0.67 0.971709
Target:  5'- uGUGUUAUCgCaccGCGUCUCCuCgUUGCCg -3'
miRNA:   3'- uCGUAAUAG-Ga--CGCAGAGGcG-AACGG- -5'
24410 5' -52.5 NC_005264.1 + 82717 0.67 0.962091
Target:  5'- cGCAUa--CUUGC-UCUgCGCUUGCCc -3'
miRNA:   3'- uCGUAauaGGACGcAGAgGCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 80464 0.67 0.971709
Target:  5'- cAGCGguggUgUGCGaagugCUCCGCUUcGCCg -3'
miRNA:   3'- -UCGUaauaGgACGCa----GAGGCGAA-CGG- -5'
24410 5' -52.5 NC_005264.1 + 77153 0.67 0.965519
Target:  5'- -aCAUg--CCgaccGCGaaCUCCGCUUGCCa -3'
miRNA:   3'- ucGUAauaGGa---CGCa-GAGGCGAACGG- -5'
24410 5' -52.5 NC_005264.1 + 62395 0.68 0.95454
Target:  5'- gGGcCAUUGaCCUGCGccCUCCGCUU-CUa -3'
miRNA:   3'- -UC-GUAAUaGGACGCa-GAGGCGAAcGG- -5'
24410 5' -52.5 NC_005264.1 + 61054 0.66 0.981621
Target:  5'- cGGCA---UCgaGCGUCUCgGCUccguucaggGCCg -3'
miRNA:   3'- -UCGUaauAGgaCGCAGAGgCGAa--------CGG- -5'
24410 5' -52.5 NC_005264.1 + 59313 0.66 0.974216
Target:  5'- cGCA-UAUCCgcucgagucucucUGCGuUCUCCcGCgUGCCa -3'
miRNA:   3'- uCGUaAUAGG-------------ACGC-AGAGG-CGaACGG- -5'
24410 5' -52.5 NC_005264.1 + 56808 0.72 0.78939
Target:  5'- uGCuUUGUCCUGCG-CUgCGCggcgGCCc -3'
miRNA:   3'- uCGuAAUAGGACGCaGAgGCGaa--CGG- -5'
24410 5' -52.5 NC_005264.1 + 55413 0.7 0.880738
Target:  5'- -aCAUUGUCCaGCGcaccaagagaaacUCUCCGUucUUGCCa -3'
miRNA:   3'- ucGUAAUAGGaCGC-------------AGAGGCG--AACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.