miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24411 5' -57.4 NC_005264.1 + 79198 0.66 0.872858
Target:  5'- cAGuGGUUcCGACCCugGGgCUAgGCu -3'
miRNA:   3'- aUCuCCAGcGCUGGGugCC-GAUgUGu -5'
24411 5' -57.4 NC_005264.1 + 37577 0.66 0.869944
Target:  5'- cGGAGGcggcaagucUCGCGGCggCCGCGGCggggggucaaaggACGCGu -3'
miRNA:   3'- aUCUCC---------AGCGCUG--GGUGCCGa------------UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 156604 0.66 0.869944
Target:  5'- cGGAGGcggcaagucUCGCGGCggCCGCGGCggggggucaaaggACGCGu -3'
miRNA:   3'- aUCUCC---------AGCGCUG--GGUGCCGa------------UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 114052 0.66 0.86551
Target:  5'- -cGAGGUCGUucGcCCCGCcGGCcuUGCACu -3'
miRNA:   3'- auCUCCAGCG--CuGGGUG-CCG--AUGUGu -5'
24411 5' -57.4 NC_005264.1 + 158058 0.66 0.86551
Target:  5'- gUGGAGGUgCGCGA---ACGGCgccGCGCAg -3'
miRNA:   3'- -AUCUCCA-GCGCUgggUGCCGa--UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 56525 0.66 0.857954
Target:  5'- gAGGGGUCGCccuGCCCGCcgcaGCUGuCGCu -3'
miRNA:   3'- aUCUCCAGCGc--UGGGUGc---CGAU-GUGu -5'
24411 5' -57.4 NC_005264.1 + 124292 0.66 0.850197
Target:  5'- gGGAGGcgagUCGCGGCCgGaCGGCgggGCGg- -3'
miRNA:   3'- aUCUCC----AGCGCUGGgU-GCCGa--UGUgu -5'
24411 5' -57.4 NC_005264.1 + 75198 0.66 0.850197
Target:  5'- --cAGGUccCGCGcCCCacGCGGCUGCAUc -3'
miRNA:   3'- aucUCCA--GCGCuGGG--UGCCGAUGUGu -5'
24411 5' -57.4 NC_005264.1 + 140669 0.66 0.850197
Target:  5'- cUAGGGGcugUUGUGACgUACGGCccgcgGCGCAa -3'
miRNA:   3'- -AUCUCC---AGCGCUGgGUGCCGa----UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 5265 0.66 0.850197
Target:  5'- gGGAGGcgagUCGCGGCCgGaCGGCgggGCGg- -3'
miRNA:   3'- aUCUCC----AGCGCUGGgU-GCCGa--UGUgu -5'
24411 5' -57.4 NC_005264.1 + 145156 0.66 0.842245
Target:  5'- -cGAGccGcCGCGGCCU-CGGCUGCGCc -3'
miRNA:   3'- auCUC--CaGCGCUGGGuGCCGAUGUGu -5'
24411 5' -57.4 NC_005264.1 + 97075 0.66 0.839822
Target:  5'- gGGAGGUaaaauauaagggugCGcCGGCCgACGGCggaccACACAu -3'
miRNA:   3'- aUCUCCA--------------GC-GCUGGgUGCCGa----UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 121866 0.66 0.834105
Target:  5'- aGGGccGGUCGCGcucgcgccgucGCCCgcuGCGGCUGCGa- -3'
miRNA:   3'- aUCU--CCAGCGC-----------UGGG---UGCCGAUGUgu -5'
24411 5' -57.4 NC_005264.1 + 2840 0.66 0.834105
Target:  5'- aGGGccGGUCGCGcucgcgccgucGCCCgcuGCGGCUGCGa- -3'
miRNA:   3'- aUCU--CCAGCGC-----------UGGG---UGCCGAUGUgu -5'
24411 5' -57.4 NC_005264.1 + 143393 0.66 0.830798
Target:  5'- aUGGGGGagagaaacccaccCGCGcCCCGCGGCcACACc -3'
miRNA:   3'- -AUCUCCa------------GCGCuGGGUGCCGaUGUGu -5'
24411 5' -57.4 NC_005264.1 + 90589 0.67 0.825784
Target:  5'- cGGcAGGUCGCGccuuGCCCGCGGUa----- -3'
miRNA:   3'- aUC-UCCAGCGC----UGGGUGCCGaugugu -5'
24411 5' -57.4 NC_005264.1 + 104844 0.67 0.825784
Target:  5'- -cGGGGcCGCuGAgCCACGGCcgccGCGCGg -3'
miRNA:   3'- auCUCCaGCG-CUgGGUGCCGa---UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 11965 0.67 0.825784
Target:  5'- -cGAGGUCGCGccaugucuugccGCgCGCGGCacggcagagUACGCGu -3'
miRNA:   3'- auCUCCAGCGC------------UGgGUGCCG---------AUGUGU- -5'
24411 5' -57.4 NC_005264.1 + 6726 0.67 0.817289
Target:  5'- --uAGcGUCGCGGuacUCCGCGGCgugGCGCGg -3'
miRNA:   3'- aucUC-CAGCGCU---GGGUGCCGa--UGUGU- -5'
24411 5' -57.4 NC_005264.1 + 68333 0.67 0.817289
Target:  5'- ------aCGUGGCCgACGGCUGCACu -3'
miRNA:   3'- aucuccaGCGCUGGgUGCCGAUGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.