miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24412 3' -50.4 NC_005264.1 + 105413 1.09 0.010239
Target:  5'- gCGAAAUAGUGCCACCUAACGCGCAGUa -3'
miRNA:   3'- -GCUUUAUCACGGUGGAUUGCGCGUCA- -5'
24412 3' -50.4 NC_005264.1 + 67890 0.74 0.83156
Target:  5'- -cGGGUAGUGCCACCaAGCGCcCGGa -3'
miRNA:   3'- gcUUUAUCACGGUGGaUUGCGcGUCa -5'
24412 3' -50.4 NC_005264.1 + 3812 0.73 0.856699
Target:  5'- gCGAGGaGGUGCUcCCU-GCGCGCGGa -3'
miRNA:   3'- -GCUUUaUCACGGuGGAuUGCGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 116962 0.73 0.856699
Target:  5'- --cGAUGGUGUCGCUUGcauuggcgGCGCGCAGa -3'
miRNA:   3'- gcuUUAUCACGGUGGAU--------UGCGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 31028 0.71 0.913637
Target:  5'- gCGAc--GGUGCCGCCUAGCggucGUGCGGc -3'
miRNA:   3'- -GCUuuaUCACGGUGGAUUG----CGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 150055 0.71 0.913637
Target:  5'- gCGAc--GGUGCCGCCUAGCggucGUGCGGc -3'
miRNA:   3'- -GCUuuaUCACGGUGGAUUG----CGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 34237 0.7 0.945735
Target:  5'- aCGGAcgGGUuucgucCCGCCUcguGCGCGCGGUa -3'
miRNA:   3'- -GCUUuaUCAc-----GGUGGAu--UGCGCGUCA- -5'
24412 3' -50.4 NC_005264.1 + 16970 0.7 0.945735
Target:  5'- aCGAGAgcagaagAG-GCCGCCauuggcccaaUAACGCGCAGc -3'
miRNA:   3'- -GCUUUa------UCaCGGUGG----------AUUGCGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 120092 0.7 0.954388
Target:  5'- gGGAGUcGUGcCCACCgggugcCGCGCAGa -3'
miRNA:   3'- gCUUUAuCAC-GGUGGauu---GCGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 51947 0.69 0.96878
Target:  5'- gCGAG--GGUGCCG-CUAACGCGUcGUg -3'
miRNA:   3'- -GCUUuaUCACGGUgGAUUGCGCGuCA- -5'
24412 3' -50.4 NC_005264.1 + 107566 0.69 0.971803
Target:  5'- ------cGUGCgGCCUAGCGCGCc-- -3'
miRNA:   3'- gcuuuauCACGgUGGAUUGCGCGuca -5'
24412 3' -50.4 NC_005264.1 + 33904 0.69 0.974609
Target:  5'- gCGAGAUAGcGCCGCCUuucugcCGC-CAGg -3'
miRNA:   3'- -GCUUUAUCaCGGUGGAuu----GCGcGUCa -5'
24412 3' -50.4 NC_005264.1 + 154125 0.69 0.974609
Target:  5'- cCGAAAcGGcgGCCACgc-GCGCGCAGa -3'
miRNA:   3'- -GCUUUaUCa-CGGUGgauUGCGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 152930 0.69 0.974609
Target:  5'- gCGAGAUAGcGCCGCCUuucugcCGC-CAGg -3'
miRNA:   3'- -GCUUUAUCaCGGUGGAuu----GCGcGUCa -5'
24412 3' -50.4 NC_005264.1 + 87565 0.68 0.979603
Target:  5'- uGAGAUGGUGUacaACCUgauuaacacGACGCGCu-- -3'
miRNA:   3'- gCUUUAUCACGg--UGGA---------UUGCGCGuca -5'
24412 3' -50.4 NC_005264.1 + 74084 0.68 0.981807
Target:  5'- cCGGAGUAGUGUgGUCguacAugGCGCGGUc -3'
miRNA:   3'- -GCUUUAUCACGgUGGa---UugCGCGUCA- -5'
24412 3' -50.4 NC_005264.1 + 151543 0.68 0.983827
Target:  5'- gCGgcGUGGacGCCcuacCCUGGCGCGUAGUu -3'
miRNA:   3'- -GCuuUAUCa-CGGu---GGAUUGCGCGUCA- -5'
24412 3' -50.4 NC_005264.1 + 148383 0.68 0.983827
Target:  5'- cCGAu-UAGcuaacagGCCAaCUAACGCGCAGa -3'
miRNA:   3'- -GCUuuAUCa------CGGUgGAUUGCGCGUCa -5'
24412 3' -50.4 NC_005264.1 + 38969 0.68 0.985495
Target:  5'- cCGAGccuacucuGUGCCGCCUGGCGgaacaccUGCAGa -3'
miRNA:   3'- -GCUUuau-----CACGGUGGAUUGC-------GCGUCa -5'
24412 3' -50.4 NC_005264.1 + 157996 0.68 0.985495
Target:  5'- cCGAGccuacucuGUGCCGCCUGGCGgaacaccUGCAGa -3'
miRNA:   3'- -GCUUuau-----CACGGUGGAUUGC-------GCGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.