miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24413 3' -54.9 NC_005264.1 + 157215 0.66 0.945086
Target:  5'- ---cUGCCCAaccacgucaagguguUCGCGUGGGUCUUCg- -3'
miRNA:   3'- cuuuACGGGU---------------GGUGCGCUCAGAGGag -5'
24413 3' -54.9 NC_005264.1 + 7882 0.66 0.943274
Target:  5'- ----cGCCCcagauGCgGCGuCGgaGGUCUCCUCg -3'
miRNA:   3'- cuuuaCGGG-----UGgUGC-GC--UCAGAGGAG- -5'
24413 3' -54.9 NC_005264.1 + 126908 0.66 0.943274
Target:  5'- ----cGCCCcagauGCgGCGuCGgaGGUCUCCUCg -3'
miRNA:   3'- cuuuaCGGG-----UGgUGC-GC--UCAGAGGAG- -5'
24413 3' -54.9 NC_005264.1 + 20715 0.66 0.938577
Target:  5'- ----aGUCCAUCuGCGCGAGgugcCUCCUa -3'
miRNA:   3'- cuuuaCGGGUGG-UGCGCUCa---GAGGAg -5'
24413 3' -54.9 NC_005264.1 + 14546 0.66 0.933636
Target:  5'- ----cGCgCACgCGCGCG-GUCUCCa- -3'
miRNA:   3'- cuuuaCGgGUG-GUGCGCuCAGAGGag -5'
24413 3' -54.9 NC_005264.1 + 116376 0.66 0.933636
Target:  5'- ----gGCCUGCCGuCGCGGGagacCUCUUCg -3'
miRNA:   3'- cuuuaCGGGUGGU-GCGCUCa---GAGGAG- -5'
24413 3' -54.9 NC_005264.1 + 43415 0.66 0.933636
Target:  5'- cGAGAUcGCCCGCCAgcCGCGAGUg----- -3'
miRNA:   3'- -CUUUA-CGGGUGGU--GCGCUCAgaggag -5'
24413 3' -54.9 NC_005264.1 + 79991 0.66 0.930555
Target:  5'- -cGAUGCCgGCCGCGCGgaAGaggaggcgcggcacaUCUCCg- -3'
miRNA:   3'- cuUUACGGgUGGUGCGC--UC---------------AGAGGag -5'
24413 3' -54.9 NC_005264.1 + 156888 0.66 0.928452
Target:  5'- cGAAUGCgCCGCUgcccuGCGCGAGgggUUCCg- -3'
miRNA:   3'- cUUUACG-GGUGG-----UGCGCUCa--GAGGag -5'
24413 3' -54.9 NC_005264.1 + 37862 0.66 0.928452
Target:  5'- cGAAUGCgCCGCUgcccuGCGCGAGgggUUCCg- -3'
miRNA:   3'- cUUUACG-GGUGG-----UGCGCUCa--GAGGag -5'
24413 3' -54.9 NC_005264.1 + 3816 0.67 0.917351
Target:  5'- gGAGGUGCucCCugCGCGCGgAGaccugCUCCUg -3'
miRNA:   3'- -CUUUACG--GGugGUGCGC-UCa----GAGGAg -5'
24413 3' -54.9 NC_005264.1 + 53165 0.67 0.916771
Target:  5'- ---cUGCUCGucuugggcgaguuCCACGuCGAGUCUCCg- -3'
miRNA:   3'- cuuuACGGGU-------------GGUGC-GCUCAGAGGag -5'
24413 3' -54.9 NC_005264.1 + 84863 0.67 0.911436
Target:  5'- ----cGCCCGCUccgguACGCGcggcgccggcaGGUCUCUUCu -3'
miRNA:   3'- cuuuaCGGGUGG-----UGCGC-----------UCAGAGGAG- -5'
24413 3' -54.9 NC_005264.1 + 73777 0.67 0.905279
Target:  5'- --cAUGUCCGCCAC-CGAGU-UCCUg -3'
miRNA:   3'- cuuUACGGGUGGUGcGCUCAgAGGAg -5'
24413 3' -54.9 NC_005264.1 + 121900 0.67 0.905279
Target:  5'- ----aGCCgCGCgAUGCGGGUCUgUUCa -3'
miRNA:   3'- cuuuaCGG-GUGgUGCGCUCAGAgGAG- -5'
24413 3' -54.9 NC_005264.1 + 58496 0.67 0.898882
Target:  5'- ----gGCCCGCCugaGCGGcacCUCCUCg -3'
miRNA:   3'- cuuuaCGGGUGGug-CGCUca-GAGGAG- -5'
24413 3' -54.9 NC_005264.1 + 156916 0.67 0.898882
Target:  5'- ----gGCCgugguuagauagCGCCuCGCGAGUCUCCg- -3'
miRNA:   3'- cuuuaCGG------------GUGGuGCGCUCAGAGGag -5'
24413 3' -54.9 NC_005264.1 + 54451 0.67 0.892249
Target:  5'- gGGGAUGCCCACCGC-CGAG-CUg--- -3'
miRNA:   3'- -CUUUACGGGUGGUGcGCUCaGAggag -5'
24413 3' -54.9 NC_005264.1 + 102840 0.67 0.885382
Target:  5'- ----gGCCgCgGCCACGCGGccGUCUCgCUCg -3'
miRNA:   3'- cuuuaCGG-G-UGGUGCGCU--CAGAG-GAG- -5'
24413 3' -54.9 NC_005264.1 + 77074 0.68 0.878287
Target:  5'- ----aGCCC-CCGCGCaaugucuuggGGGUCUCCg- -3'
miRNA:   3'- cuuuaCGGGuGGUGCG----------CUCAGAGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.