miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24413 5' -64.2 NC_005264.1 + 105654 0.66 0.589321
Target:  5'- cACGGGC-GGCGCUuuGC-CGGCGGCa-- -3'
miRNA:   3'- -UGCUCGcCCGCGG--CGuGCUGCCGgac -5'
24413 5' -64.2 NC_005264.1 + 3669 0.66 0.589321
Target:  5'- gACGA-UGGGCgGCCGUcuCGGCGGCgaGa -3'
miRNA:   3'- -UGCUcGCCCG-CGGCGu-GCUGCCGgaC- -5'
24413 5' -64.2 NC_005264.1 + 122696 0.66 0.589321
Target:  5'- gACGA-UGGGCgGCCGUcuCGGCGGCgaGa -3'
miRNA:   3'- -UGCUcGCCCG-CGGCGu-GCUGCCGgaC- -5'
24413 5' -64.2 NC_005264.1 + 125651 0.66 0.579755
Target:  5'- -gGAGC-GGCGCCGUaaaauGCGucuGCGGCCc- -3'
miRNA:   3'- ugCUCGcCCGCGGCG-----UGC---UGCCGGac -5'
24413 5' -64.2 NC_005264.1 + 41420 0.66 0.579755
Target:  5'- gGCaGGCcGGCGCCgggcuccugcGgGCGACGGCCa- -3'
miRNA:   3'- -UGcUCGcCCGCGG----------CgUGCUGCCGGac -5'
24413 5' -64.2 NC_005264.1 + 68247 0.66 0.579755
Target:  5'- aGCcauGCccGCGCCGCG-GGCGGCCUGc -3'
miRNA:   3'- -UGcu-CGccCGCGGCGUgCUGCCGGAC- -5'
24413 5' -64.2 NC_005264.1 + 160447 0.66 0.579755
Target:  5'- gGCaGGCcGGCGCCgggcuccugcGgGCGACGGCCa- -3'
miRNA:   3'- -UGcUCGcCCGCGG----------CgUGCUGCCGGac -5'
24413 5' -64.2 NC_005264.1 + 47787 0.66 0.579755
Target:  5'- cGCGAGCaGGUGUCGUgacuagagAUGGCGGCg-- -3'
miRNA:   3'- -UGCUCGcCCGCGGCG--------UGCUGCCGgac -5'
24413 5' -64.2 NC_005264.1 + 126109 0.66 0.579755
Target:  5'- --aGGCGGGCaaggaaUGCGCGGCGGCUg- -3'
miRNA:   3'- ugcUCGCCCGcg----GCGUGCUGCCGGac -5'
24413 5' -64.2 NC_005264.1 + 55334 0.66 0.570223
Target:  5'- cACGuGCGcGuuGUCGCucGCGGCGGCCUu -3'
miRNA:   3'- -UGCuCGC-CcgCGGCG--UGCUGCCGGAc -5'
24413 5' -64.2 NC_005264.1 + 31164 0.66 0.570223
Target:  5'- uGCGAGCcgacGUGCCGC-CaACGGUCUGg -3'
miRNA:   3'- -UGCUCGcc--CGCGGCGuGcUGCCGGAC- -5'
24413 5' -64.2 NC_005264.1 + 128895 0.66 0.570223
Target:  5'- uCGGGCGcGGUcCCgGCGCGccACGGCCUu -3'
miRNA:   3'- uGCUCGC-CCGcGG-CGUGC--UGCCGGAc -5'
24413 5' -64.2 NC_005264.1 + 37382 0.66 0.570223
Target:  5'- cCGAGCaGGGCGCgGCA-GAgGGaCCg- -3'
miRNA:   3'- uGCUCG-CCCGCGgCGUgCUgCC-GGac -5'
24413 5' -64.2 NC_005264.1 + 148186 0.66 0.570223
Target:  5'- -gGAGCGGGUGagGUuauUGGCGGCCg- -3'
miRNA:   3'- ugCUCGCCCGCggCGu--GCUGCCGGac -5'
24413 5' -64.2 NC_005264.1 + 57163 0.66 0.570223
Target:  5'- uGCGccGGCGGGagaCGCCGUGuuguucugaucUGACGGCCa- -3'
miRNA:   3'- -UGC--UCGCCC---GCGGCGU-----------GCUGCCGGac -5'
24413 5' -64.2 NC_005264.1 + 9869 0.66 0.570223
Target:  5'- uCGGGCGcGGUcCCgGCGCGccACGGCCUu -3'
miRNA:   3'- uGCUCGC-CCGcGG-CGUGC--UGCCGGAc -5'
24413 5' -64.2 NC_005264.1 + 148507 0.66 0.569272
Target:  5'- cGCGuuGGCGGcgaGCGCCGCGgaagaaauuugugUGAUGGCgUGg -3'
miRNA:   3'- -UGC--UCGCC---CGCGGCGU-------------GCUGCCGgAC- -5'
24413 5' -64.2 NC_005264.1 + 68407 0.66 0.564522
Target:  5'- uGCGGGaggaCGGGCuGCUcgcucuggacuaccgGCGCcGCGGCCUGa -3'
miRNA:   3'- -UGCUC----GCCCG-CGG---------------CGUGcUGCCGGAC- -5'
24413 5' -64.2 NC_005264.1 + 121892 0.66 0.560729
Target:  5'- uACGAGCaa--GCCGCGCGAUgcgGGUCUGu -3'
miRNA:   3'- -UGCUCGcccgCGGCGUGCUG---CCGGAC- -5'
24413 5' -64.2 NC_005264.1 + 92180 0.66 0.559782
Target:  5'- uGCcGGC-GGCGCCGCGgccacgguguuguUGACGcGCCUGc -3'
miRNA:   3'- -UGcUCGcCCGCGGCGU-------------GCUGC-CGGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.