miRNA display CGI


Results 21 - 40 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24414 3' -60.2 NC_005264.1 + 130283 0.66 0.734644
Target:  5'- uGCGGCGGcuaccGCGGCAGccacauccacagccaGgGCCGaGGAUg -3'
miRNA:   3'- -CGCCGCCu----UGCCGUC---------------UgCGGCgUCUA- -5'
24414 3' -60.2 NC_005264.1 + 11986 0.66 0.734644
Target:  5'- cGCGcGCGGcACGGCAGAguacgcgucacgaccUGCgGCGGc- -3'
miRNA:   3'- -CGC-CGCCuUGCCGUCU---------------GCGgCGUCua -5'
24414 3' -60.2 NC_005264.1 + 116667 0.66 0.730831
Target:  5'- aUGGCGGGGCGGC---CGCCGaucCAGGg -3'
miRNA:   3'- cGCCGCCUUGCCGucuGCGGC---GUCUa -5'
24414 3' -60.2 NC_005264.1 + 86429 0.66 0.729876
Target:  5'- cGUGGCGcAcccaaucgcgcACGGCauaauggAGACGCUGCAGGa -3'
miRNA:   3'- -CGCCGCcU-----------UGCCG-------UCUGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 129604 0.66 0.727963
Target:  5'- uGCGGCGcGGCGGCgaagcuucucgaguAGACGCCGa---- -3'
miRNA:   3'- -CGCCGCcUUGCCG--------------UCUGCGGCgucua -5'
24414 3' -60.2 NC_005264.1 + 6795 0.66 0.721244
Target:  5'- uGCGGCGGcucagagggGACGGuCAGGguguUGCCGgAGGc -3'
miRNA:   3'- -CGCCGCC---------UUGCC-GUCU----GCGGCgUCUa -5'
24414 3' -60.2 NC_005264.1 + 142503 0.66 0.721244
Target:  5'- uGCGcGCGGAACGGCA-ACG-UGCAaGAg -3'
miRNA:   3'- -CGC-CGCCUUGCCGUcUGCgGCGU-CUa -5'
24414 3' -60.2 NC_005264.1 + 125821 0.66 0.721244
Target:  5'- uGCGGCGGcucagagggGACGGuCAGGguguUGCCGgAGGc -3'
miRNA:   3'- -CGCCGCC---------UUGCC-GUCU----GCGGCgUCUa -5'
24414 3' -60.2 NC_005264.1 + 60899 0.66 0.721244
Target:  5'- cGCGGUGG---GGCcGACGCCGcCAGu- -3'
miRNA:   3'- -CGCCGCCuugCCGuCUGCGGC-GUCua -5'
24414 3' -60.2 NC_005264.1 + 54213 0.66 0.715456
Target:  5'- cGCGGgGGAuacggacgGCGGCcggugcguucacgcuAGgcugcuagaGCGCCGCAGGg -3'
miRNA:   3'- -CGCCgCCU--------UGCCG---------------UC---------UGCGGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 125492 0.66 0.711584
Target:  5'- uCGGCGGcGCGGCGaACGUCGgGGu- -3'
miRNA:   3'- cGCCGCCuUGCCGUcUGCGGCgUCua -5'
24414 3' -60.2 NC_005264.1 + 149421 0.66 0.711584
Target:  5'- uCGGCGG--CGGCGGucgcGCGCCgguGCGGAg -3'
miRNA:   3'- cGCCGCCuuGCCGUC----UGCGG---CGUCUa -5'
24414 3' -60.2 NC_005264.1 + 70669 0.66 0.711584
Target:  5'- cGCGGCGccgcCGGCAGgcaauuuuuACGCcCGCGGGc -3'
miRNA:   3'- -CGCCGCcuu-GCCGUC---------UGCG-GCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 110145 0.66 0.711584
Target:  5'- gGgGGCGG-GCGGCGaaaccCGCCGCGGc- -3'
miRNA:   3'- -CgCCGCCuUGCCGUcu---GCGGCGUCua -5'
24414 3' -60.2 NC_005264.1 + 30394 0.66 0.711584
Target:  5'- uCGGCGG--CGGCGGucgcGCGCCgguGCGGAg -3'
miRNA:   3'- cGCCGCCuuGCCGUC----UGCGG---CGUCUa -5'
24414 3' -60.2 NC_005264.1 + 20829 0.66 0.711584
Target:  5'- uCGcGCGG-ACGGCgAGAUGCCGUAu-- -3'
miRNA:   3'- cGC-CGCCuUGCCG-UCUGCGGCGUcua -5'
24414 3' -60.2 NC_005264.1 + 6465 0.66 0.711584
Target:  5'- uCGGCGGcGCGGCGaACGUCGgGGu- -3'
miRNA:   3'- cGCCGCCuUGCCGUcUGCGGCgUCua -5'
24414 3' -60.2 NC_005264.1 + 57484 0.66 0.711584
Target:  5'- gGCGGCGG--CGGCGaagaugcuGGCGCgCGCGGc- -3'
miRNA:   3'- -CGCCGCCuuGCCGU--------CUGCG-GCGUCua -5'
24414 3' -60.2 NC_005264.1 + 100205 0.66 0.711584
Target:  5'- uGCuGCGcuuGGACGGCGGGCGagaagaccUCGCAGAa -3'
miRNA:   3'- -CGcCGC---CUUGCCGUCUGC--------GGCGUCUa -5'
24414 3' -60.2 NC_005264.1 + 40788 0.67 0.701861
Target:  5'- cGCGGCGccgaGAGCGGagccgcuUGCCGCGGGg -3'
miRNA:   3'- -CGCCGC----CUUGCCgucu---GCGGCGUCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.