miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 133043 0.66 0.954365
Target:  5'- uCCGCGgcggUGCGCGUguuucUGGCu--CGCa -3'
miRNA:   3'- uGGUGCaua-ACGCGCG-----ACCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 112672 0.66 0.954365
Target:  5'- gGCCACGgagUAUUGCGgcaCGCccuCGUGCGCc -3'
miRNA:   3'- -UGGUGC---AUAACGC---GCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137636 0.66 0.954365
Target:  5'- gGCCACcg--UGUGCGCcaacaCGUACGCg -3'
miRNA:   3'- -UGGUGcauaACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 95441 0.66 0.952774
Target:  5'- aGCCGuCGUGgaauacgcuacCGCGCcGGCGgGCGCa -3'
miRNA:   3'- -UGGU-GCAUaac--------GCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 109368 0.66 0.951964
Target:  5'- uUgGCGaugUGCGCGUUgcgccuagucaagucGGCGUugGCg -3'
miRNA:   3'- uGgUGCauaACGCGCGA---------------CCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 124874 0.66 0.950317
Target:  5'- cGCCACGUGccGCGCaaCUGGCuaacCGCc -3'
miRNA:   3'- -UGGUGCAUaaCGCGc-GACCGcau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 66968 0.66 0.950317
Target:  5'- cCCAUc----GCgGCGUUGGUGUACGCc -3'
miRNA:   3'- uGGUGcauaaCG-CGCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 125284 0.66 0.950317
Target:  5'- uCCGCGgcg-GCGCGCUGuCGcuuCGCc -3'
miRNA:   3'- uGGUGCauaaCGCGCGACcGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 6823 0.66 0.946036
Target:  5'- cACCGCGcaa-GCGuCGCcgGGCGUACcuuGCu -3'
miRNA:   3'- -UGGUGCauaaCGC-GCGa-CCGCAUG---CG- -5'
24415 3' -54.7 NC_005264.1 + 24898 0.66 0.946036
Target:  5'- cGCUcuuCGUAUagucGCGuCGCUGGgGUgACGCg -3'
miRNA:   3'- -UGGu--GCAUAa---CGC-GCGACCgCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 67626 0.66 0.946036
Target:  5'- cGCCACGc---GgGCGCaggGGUGUccuGCGCg -3'
miRNA:   3'- -UGGUGCauaaCgCGCGa--CCGCA---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 83247 0.66 0.946036
Target:  5'- gGCCGCcgc-UGaUGCGCUGGCGcgGCGa -3'
miRNA:   3'- -UGGUGcauaAC-GCGCGACCGCa-UGCg -5'
24415 3' -54.7 NC_005264.1 + 22146 0.66 0.941519
Target:  5'- gACgCGCGccuuagAUUGCGcCGCgGGCcGUACGUc -3'
miRNA:   3'- -UG-GUGCa-----UAACGC-GCGaCCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 85844 0.66 0.941519
Target:  5'- uACCGgGUcUUGCGCGCacuucuucGGUGgguCGCa -3'
miRNA:   3'- -UGGUgCAuAACGCGCGa-------CCGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 54908 0.66 0.941519
Target:  5'- uCCACGcgaagGUcgcgGCGCuGCUGGCGaACGg -3'
miRNA:   3'- uGGUGCa----UAa---CGCG-CGACCGCaUGCg -5'
24415 3' -54.7 NC_005264.1 + 52205 0.66 0.941519
Target:  5'- gGCCGUGgg--GCGCGgUGGCGcgagcuggUACGCc -3'
miRNA:   3'- -UGGUGCauaaCGCGCgACCGC--------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 79898 0.66 0.941519
Target:  5'- gGCCugGUcuUUGCGUGCgcgUGGCcgACGUc -3'
miRNA:   3'- -UGGugCAu-AACGCGCG---ACCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 25198 0.66 0.941519
Target:  5'- gGCCGCGUA---CGUGUUGGCGcACa- -3'
miRNA:   3'- -UGGUGCAUaacGCGCGACCGCaUGcg -5'
24415 3' -54.7 NC_005264.1 + 154561 0.66 0.936765
Target:  5'- cCCACGg---GCGCcuuGUUGGCGUuccugaaccaacACGCc -3'
miRNA:   3'- uGGUGCauaaCGCG---CGACCGCA------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 162685 0.66 0.936765
Target:  5'- -gUACGgucgGCGCGCUGcGCGccgGCGUu -3'
miRNA:   3'- ugGUGCauaaCGCGCGAC-CGCa--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.