miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 155935 0.71 0.737102
Target:  5'- cCCACGgaaagccGCGCGCUGGgacUGCGCg -3'
miRNA:   3'- uGGUGCauaa---CGCGCGACCgc-AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 131590 0.71 0.746861
Target:  5'- cGCCuAgGUGUggagggagcgGCGCGCgugGGCGcGCGCg -3'
miRNA:   3'- -UGG-UgCAUAa---------CGCGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 3611 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 122638 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137791 0.71 0.766064
Target:  5'- cACCAUcugGUUGCaGCGCaUGGC-UACGCa -3'
miRNA:   3'- -UGGUGca-UAACG-CGCG-ACCGcAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137287 0.71 0.746861
Target:  5'- cGCgGCGUuggcgGCGaCGCgGGCGUACGg -3'
miRNA:   3'- -UGgUGCAuaa--CGC-GCGaCCGCAUGCg -5'
24415 3' -54.7 NC_005264.1 + 76346 0.71 0.756518
Target:  5'- gGCCGCGcggcgacUGCGCGCagGcGCGUugGUa -3'
miRNA:   3'- -UGGUGCaua----ACGCGCGa-C-CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 142264 0.71 0.746861
Target:  5'- gACUAUGgaacacccGCGCGCUGGCaGaGCGCg -3'
miRNA:   3'- -UGGUGCauaa----CGCGCGACCG-CaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 139420 0.7 0.784787
Target:  5'- --gACGg---GCacCGCUGGCGUACGCg -3'
miRNA:   3'- uggUGCauaaCGc-GCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 6423 0.7 0.789385
Target:  5'- uCCACGUAcacucucgcggcgGCGuCGCUGGCGgagaacuccucggcgGCGCg -3'
miRNA:   3'- uGGUGCAUaa-----------CGC-GCGACCGCa--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 25467 0.7 0.793947
Target:  5'- cGCCgACGUGgggGCGC-CaGGCGUACGg -3'
miRNA:   3'- -UGG-UGCAUaa-CGCGcGaCCGCAUGCg -5'
24415 3' -54.7 NC_005264.1 + 104348 0.7 0.783864
Target:  5'- cACCGCGcucUUGCGCGCauGCGUuaaugucGCGCg -3'
miRNA:   3'- -UGGUGCau-AACGCGCGacCGCA-------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 18887 0.7 0.800271
Target:  5'- cACCGCGgcUugugacgagauuuuUGCGCGCaUGGUGU-CGUa -3'
miRNA:   3'- -UGGUGCauA--------------ACGCGCG-ACCGCAuGCG- -5'
24415 3' -54.7 NC_005264.1 + 43629 0.7 0.779225
Target:  5'- cUCGCGUGgucGCGCGUUacgcucgcuucgccaGGCGUugGCc -3'
miRNA:   3'- uGGUGCAUaa-CGCGCGA---------------CCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 125450 0.7 0.789385
Target:  5'- uCCACGUAcacucucgcggcgGCGuCGCUGGCGgagaacuccucggcgGCGCg -3'
miRNA:   3'- uGGUGCAUaa-----------CGC-GCGACCGCa--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 22710 0.7 0.811815
Target:  5'- aGCCACGaGUgcgGCGCGCaaGCGUGUGUc -3'
miRNA:   3'- -UGGUGCaUAa--CGCGCGacCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 57484 0.69 0.861229
Target:  5'- gGCgGCGgcg-GCGaagauGCUGGCGcGCGCg -3'
miRNA:   3'- -UGgUGCauaaCGCg----CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 101356 0.69 0.829027
Target:  5'- gACCGCGgg--GCGCGUcGGC--GCGCu -3'
miRNA:   3'- -UGGUGCauaaCGCGCGaCCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 126062 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 85989 0.69 0.853474
Target:  5'- uCCACGUAUacuaaGcCGCGCUcGGUG-GCGCa -3'
miRNA:   3'- uGGUGCAUAa----C-GCGCGA-CCGCaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.