miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 103004 1.12 0.002566
Target:  5'- cACCACGUAUUGCGCGCUGGCGUACGCg -3'
miRNA:   3'- -UGGUGCAUAACGCGCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 93476 0.79 0.338722
Target:  5'- aACCGCGcUGUcugagGCGCuGCUGGCGgccgGCGCg -3'
miRNA:   3'- -UGGUGC-AUAa----CGCG-CGACCGCa---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 129561 0.78 0.398598
Target:  5'- cGCCGCGUGgucguggcaccgaucUUGCGCGCUcugcaGGCGcugcgGCGCg -3'
miRNA:   3'- -UGGUGCAU---------------AACGCGCGA-----CCGCa----UGCG- -5'
24415 3' -54.7 NC_005264.1 + 79325 0.76 0.457396
Target:  5'- cGCCGCau-UUGCGUGCguaGCGUGCGCg -3'
miRNA:   3'- -UGGUGcauAACGCGCGac-CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 87644 0.76 0.495208
Target:  5'- aGCCGCGUGggGCGCGggacCUGGCGgcaACGg -3'
miRNA:   3'- -UGGUGCAUaaCGCGC----GACCGCa--UGCg -5'
24415 3' -54.7 NC_005264.1 + 74235 0.75 0.524472
Target:  5'- -gCACGUA--GCGCGCUGGCc-GCGCu -3'
miRNA:   3'- ugGUGCAUaaCGCGCGACCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 36963 0.74 0.554372
Target:  5'- -gCACGacagagGUUGCGCGCUGGCGccauaguCGCc -3'
miRNA:   3'- ugGUGCa-----UAACGCGCGACCGCau-----GCG- -5'
24415 3' -54.7 NC_005264.1 + 155990 0.74 0.554372
Target:  5'- -gCACGacagagGUUGCGCGCUGGCGccauaguCGCc -3'
miRNA:   3'- ugGUGCa-----UAACGCGCGACCGCau-----GCG- -5'
24415 3' -54.7 NC_005264.1 + 148302 0.74 0.574583
Target:  5'- gACCGCGcgcgUGCGCGCcGGUGUuCGUa -3'
miRNA:   3'- -UGGUGCaua-ACGCGCGaCCGCAuGCG- -5'
24415 3' -54.7 NC_005264.1 + 49822 0.74 0.593936
Target:  5'- gGCCGCGUAUucuuuuuUGUGCGCgagcaCGUACGCc -3'
miRNA:   3'- -UGGUGCAUA-------ACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 157385 0.73 0.619548
Target:  5'- -aCACGUGUUGCugcgcaugcuguacgGCGC-GGCGUugGUa -3'
miRNA:   3'- ugGUGCAUAACG---------------CGCGaCCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 142684 0.73 0.625709
Target:  5'- uGCCGCGaucUUGgGCGCcGGCG-GCGCg -3'
miRNA:   3'- -UGGUGCau-AACgCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 78515 0.73 0.632898
Target:  5'- cACCGCGcUGgguacGCGcCGCUGGCGUcuuguuuacgcuauGCGCg -3'
miRNA:   3'- -UGGUGC-AUaa---CGC-GCGACCGCA--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 108893 0.73 0.635979
Target:  5'- cGCCAUGUggUGCGCGC-GGUcuaACGCg -3'
miRNA:   3'- -UGGUGCAuaACGCGCGaCCGca-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 134774 0.72 0.664693
Target:  5'- aGCC-CGUGUUcgcuuccGCGCGCUuuuacccGGCGUcGCGCg -3'
miRNA:   3'- -UGGuGCAUAA-------CGCGCGA-------CCGCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 120188 0.72 0.670825
Target:  5'- gGCCGCcagucugccgGCGCGCgaugGGgGUACGCa -3'
miRNA:   3'- -UGGUGcauaa-----CGCGCGa---CCgCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 1161 0.72 0.670825
Target:  5'- gGCCGCcagucugccgGCGCGCgaugGGgGUACGCa -3'
miRNA:   3'- -UGGUGcauaa-----CGCGCGa---CCgCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 142027 0.72 0.707313
Target:  5'- uCCGCGcgAUUgGCGUGCaUGGCGUGCa- -3'
miRNA:   3'- uGGUGCa-UAA-CGCGCG-ACCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 11973 0.72 0.717319
Target:  5'- cGCCAUGUcUUGcCGCGCgcggcacGGCagaGUACGCg -3'
miRNA:   3'- -UGGUGCAuAAC-GCGCGa------CCG---CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 136911 0.72 0.717319
Target:  5'- aGCCGCGUcgUGCaGUGCagccgcuucgUGGCGgacaagaagGCGCa -3'
miRNA:   3'- -UGGUGCAuaACG-CGCG----------ACCGCa--------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.