miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 8319 0.69 0.853474
Target:  5'- -gCACGcuuguUUGCGCGC-GGCauGUGCGCc -3'
miRNA:   3'- ugGUGCau---AACGCGCGaCCG--CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 85989 0.69 0.853474
Target:  5'- uCCACGUAUacuaaGcCGCGCUcGGUG-GCGCa -3'
miRNA:   3'- uGGUGCAUAa----C-GCGCGA-CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 92084 0.69 0.861229
Target:  5'- cACCGCGuUGUUGC-CGCUuGCucgccuGUACGCg -3'
miRNA:   3'- -UGGUGC-AUAACGcGCGAcCG------CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 126062 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 7035 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 29585 0.69 0.861229
Target:  5'- cGCUGCGUccuuugucUUGCGCGUcGGCGcUugGCu -3'
miRNA:   3'- -UGGUGCAu-------AACGCGCGaCCGC-AugCG- -5'
24415 3' -54.7 NC_005264.1 + 83132 0.69 0.861229
Target:  5'- gGCCGCGgag-GCGCGUcugcccucaUGGUGUcuguCGCg -3'
miRNA:   3'- -UGGUGCauaaCGCGCG---------ACCGCAu---GCG- -5'
24415 3' -54.7 NC_005264.1 + 57484 0.69 0.861229
Target:  5'- gGCgGCGgcg-GCGaagauGCUGGCGcGCGCg -3'
miRNA:   3'- -UGgUGCauaaCGCg----CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 96640 0.68 0.86803
Target:  5'- gGCCGCGgag-GCGCaccgcccgccgauGCgGGCgGUGCGCu -3'
miRNA:   3'- -UGGUGCauaaCGCG-------------CGaCCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 55120 0.68 0.868775
Target:  5'- aGCCACGaggGUUcgacaccccgccGUGCGCUGugcuggcgcaGCGUAUGCg -3'
miRNA:   3'- -UGGUGCa--UAA------------CGCGCGAC----------CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 110699 0.68 0.868775
Target:  5'- cGCCACGgacugaAUUGUaucGCGCUGGaacACGCa -3'
miRNA:   3'- -UGGUGCa-----UAACG---CGCGACCgcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 114687 0.68 0.876107
Target:  5'- aGCCACGccgagcaggAUUGCGCGgUcuCGUGCGCc -3'
miRNA:   3'- -UGGUGCa--------UAACGCGCgAccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 88076 0.68 0.876107
Target:  5'- -aCAUGUAUUGCGC-CaaGCaGUGCGCg -3'
miRNA:   3'- ugGUGCAUAACGCGcGacCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 27928 0.68 0.876107
Target:  5'- gACCGCgGUGUuggcguucUGCGCGUcggUGGuCGUGuCGCu -3'
miRNA:   3'- -UGGUG-CAUA--------ACGCGCG---ACC-GCAU-GCG- -5'
24415 3' -54.7 NC_005264.1 + 151003 0.68 0.881815
Target:  5'- gGCCGCGUGUccgaUGCGCGCUacaGCGccaucgauagggAUGCu -3'
miRNA:   3'- -UGGUGCAUA----ACGCGCGAc--CGCa-----------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 31976 0.68 0.881815
Target:  5'- gGCCGCGUGUccgaUGCGCGCUacaGCGccaucgauagggAUGCu -3'
miRNA:   3'- -UGGUGCAUA----ACGCGCGAc--CGCa-----------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 53941 0.68 0.88322
Target:  5'- uCCGCGUuagaccGCGCGCaccacaUGGCGUcacuuauugGCGCc -3'
miRNA:   3'- uGGUGCAuaa---CGCGCG------ACCGCA---------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 131001 0.68 0.88322
Target:  5'- cCCAUGUcUUGcCGCGCgcggcacGGCagaGUACGCg -3'
miRNA:   3'- uGGUGCAuAAC-GCGCGa------CCG---CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 74494 0.68 0.88322
Target:  5'- uCUACGUGgcUGCGCgGCUGGUGgAUGUc -3'
miRNA:   3'- uGGUGCAUa-ACGCG-CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 136795 0.68 0.890109
Target:  5'- -gCGCGUGgccggGCGgacaaaGCUGGCGgACGCu -3'
miRNA:   3'- ugGUGCAUaa---CGCg-----CGACCGCaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.