Results 61 - 80 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24415 | 3' | -54.7 | NC_005264.1 | + | 16766 | 0.68 | 0.890109 |
Target: 5'- cCCGCGcgGggGCGCGCUguucgGGCcggACGCa -3' miRNA: 3'- uGGUGCa-UaaCGCGCGA-----CCGca-UGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 131718 | 0.68 | 0.896769 |
Target: 5'- cGCgGCGUugcugGCGCuCUGGCGcuacaaUGCGCu -3' miRNA: 3'- -UGgUGCAuaa--CGCGcGACCGC------AUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 23607 | 0.68 | 0.896769 |
Target: 5'- cUCGCGgucuacuuUUGCuCGCUGGCGaUugGCu -3' miRNA: 3'- uGGUGCau------AACGcGCGACCGC-AugCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 70578 | 0.68 | 0.896769 |
Target: 5'- uCUACGUGgcgaagaGCGCGCUuGGCG-AgGCg -3' miRNA: 3'- uGGUGCAUaa-----CGCGCGA-CCGCaUgCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 71297 | 0.68 | 0.903197 |
Target: 5'- cGCCGCGcccgAUaUGCGCGagcaugaacUUGGCGagUGCGCg -3' miRNA: 3'- -UGGUGCa---UA-ACGCGC---------GACCGC--AUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 148488 | 0.68 | 0.903197 |
Target: 5'- gACUAUGg---GaCGCGCUGgucGCGUugGCg -3' miRNA: 3'- -UGGUGCauaaC-GCGCGAC---CGCAugCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 42057 | 0.68 | 0.903197 |
Target: 5'- aAUCGCGUugcccgcgGCGCG-UGGCGUcagcuGCGCc -3' miRNA: 3'- -UGGUGCAuaa-----CGCGCgACCGCA-----UGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 79216 | 0.67 | 0.909389 |
Target: 5'- aACUACGa---GCGuCGCuUGGCcGUGCGCu -3' miRNA: 3'- -UGGUGCauaaCGC-GCG-ACCG-CAUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 62472 | 0.67 | 0.915345 |
Target: 5'- aAUCG-GUGUUGCGCGU---CGUGCGCg -3' miRNA: 3'- -UGGUgCAUAACGCGCGaccGCAUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 154596 | 0.67 | 0.915927 |
Target: 5'- cGCCGCuGgccagacuaacCGCGCUGGCGUACu- -3' miRNA: 3'- -UGGUG-Cauaac------GCGCGACCGCAUGcg -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 16549 | 0.67 | 0.92106 |
Target: 5'- -gCGCGUAUUucaGCGCGgUGGgCG-GCGCc -3' miRNA: 3'- ugGUGCAUAA---CGCGCgACC-GCaUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 110258 | 0.67 | 0.92106 |
Target: 5'- uCCACGUAgcGCGCGUaGGCagcCGUg -3' miRNA: 3'- uGGUGCAUaaCGCGCGaCCGcauGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 114300 | 0.67 | 0.92106 |
Target: 5'- gGCgACGggg-GCGCGCgGGaCG-ACGCg -3' miRNA: 3'- -UGgUGCauaaCGCGCGaCC-GCaUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 132606 | 0.67 | 0.926536 |
Target: 5'- cACCGCu--UUGcCGCGCUGGC---CGCg -3' miRNA: 3'- -UGGUGcauAAC-GCGCGACCGcauGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 55265 | 0.67 | 0.93177 |
Target: 5'- cGCCACGaagagcUGggGCGCGCUaGGcCGcACGUu -3' miRNA: 3'- -UGGUGC------AUaaCGCGCGA-CC-GCaUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 134874 | 0.67 | 0.93177 |
Target: 5'- uACCACGg---GCGCGCaccguuguuUGGaagACGCg -3' miRNA: 3'- -UGGUGCauaaCGCGCG---------ACCgcaUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 109888 | 0.67 | 0.93177 |
Target: 5'- cGCCGCGUAgagGCGCuGCaucGGCGagucaaacacUAUGCc -3' miRNA: 3'- -UGGUGCAUaa-CGCG-CGa--CCGC----------AUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 117229 | 0.67 | 0.93177 |
Target: 5'- uACCGCGgccucUGCGgGCgGGUG-AUGCa -3' miRNA: 3'- -UGGUGCaua--ACGCgCGaCCGCaUGCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 56129 | 0.67 | 0.93177 |
Target: 5'- gACCACuag--GCGCGCgagugucGCGUugGCc -3' miRNA: 3'- -UGGUGcauaaCGCGCGac-----CGCAugCG- -5' |
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24415 | 3' | -54.7 | NC_005264.1 | + | 114478 | 0.66 | 0.936765 |
Target: 5'- -aCGCGgcacUGCGCaacgaggccGCcaUGGCGUGCGCc -3' miRNA: 3'- ugGUGCaua-ACGCG---------CG--ACCGCAUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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