miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 43659 0.66 0.936765
Target:  5'- -gUACGgucgGCGCGCUGcGCGccgGCGUu -3'
miRNA:   3'- ugGUGCauaaCGCGCGAC-CGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 84249 0.66 0.936765
Target:  5'- uACCGCGUGgacaCGCGCU-GCGUugcUGCg -3'
miRNA:   3'- -UGGUGCAUaac-GCGCGAcCGCAu--GCG- -5'
24415 3' -54.7 NC_005264.1 + 114478 0.66 0.936765
Target:  5'- -aCGCGgcacUGCGCaacgaggccGCcaUGGCGUGCGCc -3'
miRNA:   3'- ugGUGCaua-ACGCG---------CG--ACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 154561 0.66 0.936765
Target:  5'- cCCACGg---GCGCcuuGUUGGCGUuccugaaccaacACGCc -3'
miRNA:   3'- uGGUGCauaaCGCG---CGACCGCA------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 162685 0.66 0.936765
Target:  5'- -gUACGgucgGCGCGCUGcGCGccgGCGUu -3'
miRNA:   3'- ugGUGCauaaCGCGCGAC-CGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 109888 0.67 0.93177
Target:  5'- cGCCGCGUAgagGCGCuGCaucGGCGagucaaacacUAUGCc -3'
miRNA:   3'- -UGGUGCAUaa-CGCG-CGa--CCGC----------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 134874 0.67 0.93177
Target:  5'- uACCACGg---GCGCGCaccguuguuUGGaagACGCg -3'
miRNA:   3'- -UGGUGCauaaCGCGCG---------ACCgcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 55265 0.67 0.93177
Target:  5'- cGCCACGaagagcUGggGCGCGCUaGGcCGcACGUu -3'
miRNA:   3'- -UGGUGC------AUaaCGCGCGA-CC-GCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 117229 0.67 0.93177
Target:  5'- uACCGCGgccucUGCGgGCgGGUG-AUGCa -3'
miRNA:   3'- -UGGUGCaua--ACGCgCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 56129 0.67 0.93177
Target:  5'- gACCACuag--GCGCGCgagugucGCGUugGCc -3'
miRNA:   3'- -UGGUGcauaaCGCGCGac-----CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 132606 0.67 0.926536
Target:  5'- cACCGCu--UUGcCGCGCUGGC---CGCg -3'
miRNA:   3'- -UGGUGcauAAC-GCGCGACCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 110258 0.67 0.92106
Target:  5'- uCCACGUAgcGCGCGUaGGCagcCGUg -3'
miRNA:   3'- uGGUGCAUaaCGCGCGaCCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 114300 0.67 0.92106
Target:  5'- gGCgACGggg-GCGCGCgGGaCG-ACGCg -3'
miRNA:   3'- -UGgUGCauaaCGCGCGaCC-GCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 16549 0.67 0.92106
Target:  5'- -gCGCGUAUUucaGCGCGgUGGgCG-GCGCc -3'
miRNA:   3'- ugGUGCAUAA---CGCGCgACC-GCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 154596 0.67 0.915927
Target:  5'- cGCCGCuGgccagacuaacCGCGCUGGCGUACu- -3'
miRNA:   3'- -UGGUG-Cauaac------GCGCGACCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 62472 0.67 0.915345
Target:  5'- aAUCG-GUGUUGCGCGU---CGUGCGCg -3'
miRNA:   3'- -UGGUgCAUAACGCGCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 79216 0.67 0.909389
Target:  5'- aACUACGa---GCGuCGCuUGGCcGUGCGCu -3'
miRNA:   3'- -UGGUGCauaaCGC-GCG-ACCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 148488 0.68 0.903197
Target:  5'- gACUAUGg---GaCGCGCUGgucGCGUugGCg -3'
miRNA:   3'- -UGGUGCauaaC-GCGCGAC---CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 71297 0.68 0.903197
Target:  5'- cGCCGCGcccgAUaUGCGCGagcaugaacUUGGCGagUGCGCg -3'
miRNA:   3'- -UGGUGCa---UA-ACGCGC---------GACCGC--AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 42057 0.68 0.903197
Target:  5'- aAUCGCGUugcccgcgGCGCG-UGGCGUcagcuGCGCc -3'
miRNA:   3'- -UGGUGCAuaa-----CGCGCgACCGCA-----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.