miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 1161 0.72 0.670825
Target:  5'- gGCCGCcagucugccgGCGCGCgaugGGgGUACGCa -3'
miRNA:   3'- -UGGUGcauaa-----CGCGCGa---CCgCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 3611 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 6423 0.7 0.789385
Target:  5'- uCCACGUAcacucucgcggcgGCGuCGCUGGCGgagaacuccucggcgGCGCg -3'
miRNA:   3'- uGGUGCAUaa-----------CGC-GCGACCGCa--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 6823 0.66 0.946036
Target:  5'- cACCGCGcaa-GCGuCGCcgGGCGUACcuuGCu -3'
miRNA:   3'- -UGGUGCauaaCGC-GCGa-CCGCAUG---CG- -5'
24415 3' -54.7 NC_005264.1 + 7035 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 8319 0.69 0.853474
Target:  5'- -gCACGcuuguUUGCGCGC-GGCauGUGCGCc -3'
miRNA:   3'- ugGUGCau---AACGCGCGaCCG--CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 11973 0.72 0.717319
Target:  5'- cGCCAUGUcUUGcCGCGCgcggcacGGCagaGUACGCg -3'
miRNA:   3'- -UGGUGCAuAAC-GCGCGa------CCG---CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 16549 0.67 0.92106
Target:  5'- -gCGCGUAUUucaGCGCGgUGGgCG-GCGCc -3'
miRNA:   3'- ugGUGCAUAA---CGCGCgACC-GCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 16766 0.68 0.890109
Target:  5'- cCCGCGcgGggGCGCGCUguucgGGCcggACGCa -3'
miRNA:   3'- uGGUGCa-UaaCGCGCGA-----CCGca-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 18887 0.7 0.800271
Target:  5'- cACCGCGgcUugugacgagauuuuUGCGCGCaUGGUGU-CGUa -3'
miRNA:   3'- -UGGUGCauA--------------ACGCGCG-ACCGCAuGCG- -5'
24415 3' -54.7 NC_005264.1 + 22146 0.66 0.941519
Target:  5'- gACgCGCGccuuagAUUGCGcCGCgGGCcGUACGUc -3'
miRNA:   3'- -UG-GUGCa-----UAACGC-GCGaCCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 22710 0.7 0.811815
Target:  5'- aGCCACGaGUgcgGCGCGCaaGCGUGUGUc -3'
miRNA:   3'- -UGGUGCaUAa--CGCGCGacCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 23607 0.68 0.896769
Target:  5'- cUCGCGgucuacuuUUGCuCGCUGGCGaUugGCu -3'
miRNA:   3'- uGGUGCau------AACGcGCGACCGC-AugCG- -5'
24415 3' -54.7 NC_005264.1 + 24898 0.66 0.946036
Target:  5'- cGCUcuuCGUAUagucGCGuCGCUGGgGUgACGCg -3'
miRNA:   3'- -UGGu--GCAUAa---CGC-GCGACCgCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 25198 0.66 0.941519
Target:  5'- gGCCGCGUA---CGUGUUGGCGcACa- -3'
miRNA:   3'- -UGGUGCAUaacGCGCGACCGCaUGcg -5'
24415 3' -54.7 NC_005264.1 + 25467 0.7 0.793947
Target:  5'- cGCCgACGUGgggGCGC-CaGGCGUACGg -3'
miRNA:   3'- -UGG-UGCAUaa-CGCGcGaCCGCAUGCg -5'
24415 3' -54.7 NC_005264.1 + 27928 0.68 0.876107
Target:  5'- gACCGCgGUGUuggcguucUGCGCGUcggUGGuCGUGuCGCu -3'
miRNA:   3'- -UGGUG-CAUA--------ACGCGCG---ACC-GCAU-GCG- -5'
24415 3' -54.7 NC_005264.1 + 29585 0.69 0.861229
Target:  5'- cGCUGCGUccuuugucUUGCGCGUcGGCGcUugGCu -3'
miRNA:   3'- -UGGUGCAu-------AACGCGCGaCCGC-AugCG- -5'
24415 3' -54.7 NC_005264.1 + 31703 0.69 0.829027
Target:  5'- cGCCAaagGUcGCGCGCggGGCGUACu- -3'
miRNA:   3'- -UGGUgcaUAaCGCGCGa-CCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 31976 0.68 0.881815
Target:  5'- gGCCGCGUGUccgaUGCGCGCUacaGCGccaucgauagggAUGCu -3'
miRNA:   3'- -UGGUGCAUA----ACGCGCGAc--CGCa-----------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.