miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 34252 0.66 0.936765
Target:  5'- cCCGCcUcgUGCGCGCgguaauccGCGUGCuGCg -3'
miRNA:   3'- uGGUGcAuaACGCGCGac------CGCAUG-CG- -5'
24415 3' -54.7 NC_005264.1 + 35534 0.66 0.936765
Target:  5'- cCCACGg---GCGCcuuGUUGGCGUuccugaaccaacACGCc -3'
miRNA:   3'- uGGUGCauaaCGCG---CGACCGCA------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 36963 0.74 0.554372
Target:  5'- -gCACGacagagGUUGCGCGCUGGCGccauaguCGCc -3'
miRNA:   3'- ugGUGCa-----UAACGCGCGACCGCau-----GCG- -5'
24415 3' -54.7 NC_005264.1 + 42057 0.68 0.903197
Target:  5'- aAUCGCGUugcccgcgGCGCG-UGGCGUcagcuGCGCc -3'
miRNA:   3'- -UGGUGCAuaa-----CGCGCgACCGCA-----UGCG- -5'
24415 3' -54.7 NC_005264.1 + 43629 0.7 0.779225
Target:  5'- cUCGCGUGgucGCGCGUUacgcucgcuucgccaGGCGUugGCc -3'
miRNA:   3'- uGGUGCAUaa-CGCGCGA---------------CCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 43659 0.66 0.936765
Target:  5'- -gUACGgucgGCGCGCUGcGCGccgGCGUu -3'
miRNA:   3'- ugGUGCauaaCGCGCGAC-CGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 49822 0.74 0.593936
Target:  5'- gGCCGCGUAUucuuuuuUGUGCGCgagcaCGUACGCc -3'
miRNA:   3'- -UGGUGCAUA-------ACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 52205 0.66 0.941519
Target:  5'- gGCCGUGgg--GCGCGgUGGCGcgagcuggUACGCc -3'
miRNA:   3'- -UGGUGCauaaCGCGCgACCGC--------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 53941 0.68 0.88322
Target:  5'- uCCGCGUuagaccGCGCGCaccacaUGGCGUcacuuauugGCGCc -3'
miRNA:   3'- uGGUGCAuaa---CGCGCG------ACCGCA---------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 54908 0.66 0.941519
Target:  5'- uCCACGcgaagGUcgcgGCGCuGCUGGCGaACGg -3'
miRNA:   3'- uGGUGCa----UAa---CGCG-CGACCGCaUGCg -5'
24415 3' -54.7 NC_005264.1 + 55120 0.68 0.868775
Target:  5'- aGCCACGaggGUUcgacaccccgccGUGCGCUGugcuggcgcaGCGUAUGCg -3'
miRNA:   3'- -UGGUGCa--UAA------------CGCGCGAC----------CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 55204 0.69 0.829027
Target:  5'- aGCCGCGUcUUGCgGCuaUGGUGgaacACGCc -3'
miRNA:   3'- -UGGUGCAuAACG-CGcgACCGCa---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 55265 0.67 0.93177
Target:  5'- cGCCACGaagagcUGggGCGCGCUaGGcCGcACGUu -3'
miRNA:   3'- -UGGUGC------AUaaCGCGCGA-CC-GCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 56129 0.67 0.93177
Target:  5'- gACCACuag--GCGCGCgagugucGCGUugGCc -3'
miRNA:   3'- -UGGUGcauaaCGCGCGac-----CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 57484 0.69 0.861229
Target:  5'- gGCgGCGgcg-GCGaagauGCUGGCGcGCGCg -3'
miRNA:   3'- -UGgUGCauaaCGCg----CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 62472 0.67 0.915345
Target:  5'- aAUCG-GUGUUGCGCGU---CGUGCGCg -3'
miRNA:   3'- -UGGUgCAUAACGCGCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 66968 0.66 0.950317
Target:  5'- cCCAUc----GCgGCGUUGGUGUACGCc -3'
miRNA:   3'- uGGUGcauaaCG-CGCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 67626 0.66 0.946036
Target:  5'- cGCCACGc---GgGCGCaggGGUGUccuGCGCg -3'
miRNA:   3'- -UGGUGCauaaCgCGCGa--CCGCA---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 70578 0.68 0.896769
Target:  5'- uCUACGUGgcgaagaGCGCGCUuGGCG-AgGCg -3'
miRNA:   3'- uGGUGCAUaa-----CGCGCGA-CCGCaUgCG- -5'
24415 3' -54.7 NC_005264.1 + 71297 0.68 0.903197
Target:  5'- cGCCGCGcccgAUaUGCGCGagcaugaacUUGGCGagUGCGCg -3'
miRNA:   3'- -UGGUGCa---UA-ACGCGC---------GACCGC--AUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.