miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 74235 0.75 0.524472
Target:  5'- -gCACGUA--GCGCGCUGGCc-GCGCu -3'
miRNA:   3'- ugGUGCAUaaCGCGCGACCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 74494 0.68 0.88322
Target:  5'- uCUACGUGgcUGCGCgGCUGGUGgAUGUc -3'
miRNA:   3'- uGGUGCAUa-ACGCG-CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 76346 0.71 0.756518
Target:  5'- gGCCGCGcggcgacUGCGCGCagGcGCGUugGUa -3'
miRNA:   3'- -UGGUGCaua----ACGCGCGa-C-CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 78515 0.73 0.632898
Target:  5'- cACCGCGcUGgguacGCGcCGCUGGCGUcuuguuuacgcuauGCGCg -3'
miRNA:   3'- -UGGUGC-AUaa---CGC-GCGACCGCA--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 79216 0.67 0.909389
Target:  5'- aACUACGa---GCGuCGCuUGGCcGUGCGCu -3'
miRNA:   3'- -UGGUGCauaaCGC-GCG-ACCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 79325 0.76 0.457396
Target:  5'- cGCCGCau-UUGCGUGCguaGCGUGCGCg -3'
miRNA:   3'- -UGGUGcauAACGCGCGac-CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 79898 0.66 0.941519
Target:  5'- gGCCugGUcuUUGCGUGCgcgUGGCcgACGUc -3'
miRNA:   3'- -UGGugCAu-AACGCGCG---ACCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 83132 0.69 0.861229
Target:  5'- gGCCGCGgag-GCGCGUcugcccucaUGGUGUcuguCGCg -3'
miRNA:   3'- -UGGUGCauaaCGCGCG---------ACCGCAu---GCG- -5'
24415 3' -54.7 NC_005264.1 + 83247 0.66 0.946036
Target:  5'- gGCCGCcgc-UGaUGCGCUGGCGcgGCGa -3'
miRNA:   3'- -UGGUGcauaAC-GCGCGACCGCa-UGCg -5'
24415 3' -54.7 NC_005264.1 + 84249 0.66 0.936765
Target:  5'- uACCGCGUGgacaCGCGCU-GCGUugcUGCg -3'
miRNA:   3'- -UGGUGCAUaac-GCGCGAcCGCAu--GCG- -5'
24415 3' -54.7 NC_005264.1 + 85844 0.66 0.941519
Target:  5'- uACCGgGUcUUGCGCGCacuucuucGGUGgguCGCa -3'
miRNA:   3'- -UGGUgCAuAACGCGCGa-------CCGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 85989 0.69 0.853474
Target:  5'- uCCACGUAUacuaaGcCGCGCUcGGUG-GCGCa -3'
miRNA:   3'- uGGUGCAUAa----C-GCGCGA-CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 87644 0.76 0.495208
Target:  5'- aGCCGCGUGggGCGCGggacCUGGCGgcaACGg -3'
miRNA:   3'- -UGGUGCAUaaCGCGC----GACCGCa--UGCg -5'
24415 3' -54.7 NC_005264.1 + 88076 0.68 0.876107
Target:  5'- -aCAUGUAUUGCGC-CaaGCaGUGCGCg -3'
miRNA:   3'- ugGUGCAUAACGCGcGacCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 92084 0.69 0.861229
Target:  5'- cACCGCGuUGUUGC-CGCUuGCucgccuGUACGCg -3'
miRNA:   3'- -UGGUGC-AUAACGcGCGAcCG------CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 93476 0.79 0.338722
Target:  5'- aACCGCGcUGUcugagGCGCuGCUGGCGgccgGCGCg -3'
miRNA:   3'- -UGGUGC-AUAa----CGCG-CGACCGCa---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 95441 0.66 0.952774
Target:  5'- aGCCGuCGUGgaauacgcuacCGCGCcGGCGgGCGCa -3'
miRNA:   3'- -UGGU-GCAUaac--------GCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 96640 0.68 0.86803
Target:  5'- gGCCGCGgag-GCGCaccgcccgccgauGCgGGCgGUGCGCu -3'
miRNA:   3'- -UGGUGCauaaCGCG-------------CGaCCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 101356 0.69 0.829027
Target:  5'- gACCGCGgg--GCGCGUcGGC--GCGCu -3'
miRNA:   3'- -UGGUGCauaaCGCGCGaCCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 103004 1.12 0.002566
Target:  5'- cACCACGUAUUGCGCGCUGGCGUACGCg -3'
miRNA:   3'- -UGGUGCAUAACGCGCGACCGCAUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.