miRNA display CGI


Results 81 - 100 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 131718 0.68 0.896769
Target:  5'- cGCgGCGUugcugGCGCuCUGGCGcuacaaUGCGCu -3'
miRNA:   3'- -UGgUGCAuaa--CGCGcGACCGC------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 132606 0.67 0.926536
Target:  5'- cACCGCu--UUGcCGCGCUGGC---CGCg -3'
miRNA:   3'- -UGGUGcauAAC-GCGCGACCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 133043 0.66 0.954365
Target:  5'- uCCGCGgcggUGCGCGUguuucUGGCu--CGCa -3'
miRNA:   3'- uGGUGCaua-ACGCGCG-----ACCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 134774 0.72 0.664693
Target:  5'- aGCC-CGUGUUcgcuuccGCGCGCUuuuacccGGCGUcGCGCg -3'
miRNA:   3'- -UGGuGCAUAA-------CGCGCGA-------CCGCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 134874 0.67 0.93177
Target:  5'- uACCACGg---GCGCGCaccguuguuUGGaagACGCg -3'
miRNA:   3'- -UGGUGCauaaCGCGCG---------ACCgcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 136795 0.68 0.890109
Target:  5'- -gCGCGUGgccggGCGgacaaaGCUGGCGgACGCu -3'
miRNA:   3'- ugGUGCAUaa---CGCg-----CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 136911 0.72 0.717319
Target:  5'- aGCCGCGUcgUGCaGUGCagccgcuucgUGGCGgacaagaagGCGCa -3'
miRNA:   3'- -UGGUGCAuaACG-CGCG----------ACCGCa--------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 137287 0.71 0.746861
Target:  5'- cGCgGCGUuggcgGCGaCGCgGGCGUACGg -3'
miRNA:   3'- -UGgUGCAuaa--CGC-GCGaCCGCAUGCg -5'
24415 3' -54.7 NC_005264.1 + 137636 0.66 0.954365
Target:  5'- gGCCACcg--UGUGCGCcaacaCGUACGCg -3'
miRNA:   3'- -UGGUGcauaACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137791 0.71 0.766064
Target:  5'- cACCAUcugGUUGCaGCGCaUGGC-UACGCa -3'
miRNA:   3'- -UGGUGca-UAACG-CGCG-ACCGcAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 139420 0.7 0.784787
Target:  5'- --gACGg---GCacCGCUGGCGUACGCg -3'
miRNA:   3'- uggUGCauaaCGc-GCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 142027 0.72 0.707313
Target:  5'- uCCGCGcgAUUgGCGUGCaUGGCGUGCa- -3'
miRNA:   3'- uGGUGCa-UAA-CGCGCG-ACCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 142264 0.71 0.746861
Target:  5'- gACUAUGgaacacccGCGCGCUGGCaGaGCGCg -3'
miRNA:   3'- -UGGUGCauaa----CGCGCGACCG-CaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 142684 0.73 0.625709
Target:  5'- uGCCGCGaucUUGgGCGCcGGCG-GCGCg -3'
miRNA:   3'- -UGGUGCau-AACgCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 148302 0.74 0.574583
Target:  5'- gACCGCGcgcgUGCGCGCcGGUGUuCGUa -3'
miRNA:   3'- -UGGUGCaua-ACGCGCGaCCGCAuGCG- -5'
24415 3' -54.7 NC_005264.1 + 148488 0.68 0.903197
Target:  5'- gACUAUGg---GaCGCGCUGgucGCGUugGCg -3'
miRNA:   3'- -UGGUGCauaaC-GCGCGAC---CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 150729 0.69 0.829027
Target:  5'- cGCCAaagGUcGCGCGCggGGCGUACu- -3'
miRNA:   3'- -UGGUgcaUAaCGCGCGa-CCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 151003 0.68 0.881815
Target:  5'- gGCCGCGUGUccgaUGCGCGCUacaGCGccaucgauagggAUGCu -3'
miRNA:   3'- -UGGUGCAUA----ACGCGCGAc--CGCa-----------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 154561 0.66 0.936765
Target:  5'- cCCACGg---GCGCcuuGUUGGCGUuccugaaccaacACGCc -3'
miRNA:   3'- uGGUGCauaaCGCG---CGACCGCA------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 154596 0.67 0.915927
Target:  5'- cGCCGCuGgccagacuaacCGCGCUGGCGUACu- -3'
miRNA:   3'- -UGGUG-Cauaac------GCGCGACCGCAUGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.