miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 134774 0.72 0.664693
Target:  5'- aGCC-CGUGUUcgcuuccGCGCGCUuuuacccGGCGUcGCGCg -3'
miRNA:   3'- -UGGuGCAUAA-------CGCGCGA-------CCGCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 133043 0.66 0.954365
Target:  5'- uCCGCGgcggUGCGCGUguuucUGGCu--CGCa -3'
miRNA:   3'- uGGUGCaua-ACGCGCG-----ACCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 132606 0.67 0.926536
Target:  5'- cACCGCu--UUGcCGCGCUGGC---CGCg -3'
miRNA:   3'- -UGGUGcauAAC-GCGCGACCGcauGCG- -5'
24415 3' -54.7 NC_005264.1 + 131718 0.68 0.896769
Target:  5'- cGCgGCGUugcugGCGCuCUGGCGcuacaaUGCGCu -3'
miRNA:   3'- -UGgUGCAuaa--CGCGcGACCGC------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 131590 0.71 0.746861
Target:  5'- cGCCuAgGUGUggagggagcgGCGCGCgugGGCGcGCGCg -3'
miRNA:   3'- -UGG-UgCAUAa---------CGCGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 131001 0.68 0.88322
Target:  5'- cCCAUGUcUUGcCGCGCgcggcacGGCagaGUACGCg -3'
miRNA:   3'- uGGUGCAuAAC-GCGCGa------CCG---CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 129561 0.78 0.398598
Target:  5'- cGCCGCGUGgucguggcaccgaucUUGCGCGCUcugcaGGCGcugcgGCGCg -3'
miRNA:   3'- -UGGUGCAU---------------AACGCGCGA-----CCGCa----UGCG- -5'
24415 3' -54.7 NC_005264.1 + 126062 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 125450 0.7 0.789385
Target:  5'- uCCACGUAcacucucgcggcgGCGuCGCUGGCGgagaacuccucggcgGCGCg -3'
miRNA:   3'- uGGUGCAUaa-----------CGC-GCGACCGCa--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 125284 0.66 0.950317
Target:  5'- uCCGCGgcg-GCGCGCUGuCGcuuCGCc -3'
miRNA:   3'- uGGUGCauaaCGCGCGACcGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 124874 0.66 0.950317
Target:  5'- cGCCACGUGccGCGCaaCUGGCuaacCGCc -3'
miRNA:   3'- -UGGUGCAUaaCGCGc-GACCGcau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 122638 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 120188 0.72 0.670825
Target:  5'- gGCCGCcagucugccgGCGCGCgaugGGgGUACGCa -3'
miRNA:   3'- -UGGUGcauaa-----CGCGCGa---CCgCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 117229 0.67 0.93177
Target:  5'- uACCGCGgccucUGCGgGCgGGUG-AUGCa -3'
miRNA:   3'- -UGGUGCaua--ACGCgCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 114687 0.68 0.876107
Target:  5'- aGCCACGccgagcaggAUUGCGCGgUcuCGUGCGCc -3'
miRNA:   3'- -UGGUGCa--------UAACGCGCgAccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 114478 0.66 0.936765
Target:  5'- -aCGCGgcacUGCGCaacgaggccGCcaUGGCGUGCGCc -3'
miRNA:   3'- ugGUGCaua-ACGCG---------CG--ACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 114300 0.67 0.92106
Target:  5'- gGCgACGggg-GCGCGCgGGaCG-ACGCg -3'
miRNA:   3'- -UGgUGCauaaCGCGCGaCC-GCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 112672 0.66 0.954365
Target:  5'- gGCCACGgagUAUUGCGgcaCGCccuCGUGCGCc -3'
miRNA:   3'- -UGGUGC---AUAACGC---GCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 110699 0.68 0.868775
Target:  5'- cGCCACGgacugaAUUGUaucGCGCUGGaacACGCa -3'
miRNA:   3'- -UGGUGCa-----UAACG---CGCGACCgcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 110258 0.67 0.92106
Target:  5'- uCCACGUAgcGCGCGUaGGCagcCGUg -3'
miRNA:   3'- uGGUGCAUaaCGCGCGaCCGcauGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.