miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 57484 0.69 0.861229
Target:  5'- gGCgGCGgcg-GCGaagauGCUGGCGcGCGCg -3'
miRNA:   3'- -UGgUGCauaaCGCg----CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 122638 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137791 0.71 0.766064
Target:  5'- cACCAUcugGUUGCaGCGCaUGGC-UACGCa -3'
miRNA:   3'- -UGGUGca-UAACG-CGCG-ACCGcAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 43629 0.7 0.779225
Target:  5'- cUCGCGUGgucGCGCGUUacgcucgcuucgccaGGCGUugGCc -3'
miRNA:   3'- uGGUGCAUaa-CGCGCGA---------------CCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 104348 0.7 0.783864
Target:  5'- cACCGCGcucUUGCGCGCauGCGUuaaugucGCGCg -3'
miRNA:   3'- -UGGUGCau-AACGCGCGacCGCA-------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 125450 0.7 0.789385
Target:  5'- uCCACGUAcacucucgcggcgGCGuCGCUGGCGgagaacuccucggcgGCGCg -3'
miRNA:   3'- uGGUGCAUaa-----------CGC-GCGACCGCa--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 22710 0.7 0.811815
Target:  5'- aGCCACGaGUgcgGCGCGCaaGCGUGUGUc -3'
miRNA:   3'- -UGGUGCaUAa--CGCGCGacCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 150729 0.69 0.829027
Target:  5'- cGCCAaagGUcGCGCGCggGGCGUACu- -3'
miRNA:   3'- -UGGUgcaUAaCGCGCGa-CCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 8319 0.69 0.853474
Target:  5'- -gCACGcuuguUUGCGCGC-GGCauGUGCGCc -3'
miRNA:   3'- ugGUGCau---AACGCGCGaCCG--CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 76346 0.71 0.756518
Target:  5'- gGCCGCGcggcgacUGCGCGCagGcGCGUugGUa -3'
miRNA:   3'- -UGGUGCaua----ACGCGCGa-C-CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 142264 0.71 0.746861
Target:  5'- gACUAUGgaacacccGCGCGCUGGCaGaGCGCg -3'
miRNA:   3'- -UGGUGCauaa----CGCGCGACCG-CaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 136911 0.72 0.717319
Target:  5'- aGCCGCGUcgUGCaGUGCagccgcuucgUGGCGgacaagaagGCGCa -3'
miRNA:   3'- -UGGUGCAuaACG-CGCG----------ACCGCa--------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 79325 0.76 0.457396
Target:  5'- cGCCGCau-UUGCGUGCguaGCGUGCGCg -3'
miRNA:   3'- -UGGUGcauAACGCGCGac-CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 155990 0.74 0.554372
Target:  5'- -gCACGacagagGUUGCGCGCUGGCGccauaguCGCc -3'
miRNA:   3'- ugGUGCa-----UAACGCGCGACCGCau-----GCG- -5'
24415 3' -54.7 NC_005264.1 + 148302 0.74 0.574583
Target:  5'- gACCGCGcgcgUGCGCGCcGGUGUuCGUa -3'
miRNA:   3'- -UGGUGCaua-ACGCGCGaCCGCAuGCG- -5'
24415 3' -54.7 NC_005264.1 + 49822 0.74 0.593936
Target:  5'- gGCCGCGUAUucuuuuuUGUGCGCgagcaCGUACGCc -3'
miRNA:   3'- -UGGUGCAUA-------ACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 142684 0.73 0.625709
Target:  5'- uGCCGCGaucUUGgGCGCcGGCG-GCGCg -3'
miRNA:   3'- -UGGUGCau-AACgCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 78515 0.73 0.632898
Target:  5'- cACCGCGcUGgguacGCGcCGCUGGCGUcuuguuuacgcuauGCGCg -3'
miRNA:   3'- -UGGUGC-AUaa---CGC-GCGACCGCA--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 120188 0.72 0.670825
Target:  5'- gGCCGCcagucugccgGCGCGCgaugGGgGUACGCa -3'
miRNA:   3'- -UGGUGcauaa-----CGCGCGa---CCgCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 142027 0.72 0.707313
Target:  5'- uCCGCGcgAUUgGCGUGCaUGGCGUGCa- -3'
miRNA:   3'- uGGUGCa-UAA-CGCGCG-ACCGCAUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.