miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 137791 0.71 0.766064
Target:  5'- cACCAUcugGUUGCaGCGCaUGGC-UACGCa -3'
miRNA:   3'- -UGGUGca-UAACG-CGCG-ACCGcAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 88076 0.68 0.876107
Target:  5'- -aCAUGUAUUGCGC-CaaGCaGUGCGCg -3'
miRNA:   3'- ugGUGCAUAACGCGcGacCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 27928 0.68 0.876107
Target:  5'- gACCGCgGUGUuggcguucUGCGCGUcggUGGuCGUGuCGCu -3'
miRNA:   3'- -UGGUG-CAUA--------ACGCGCG---ACC-GCAU-GCG- -5'
24415 3' -54.7 NC_005264.1 + 55120 0.68 0.868775
Target:  5'- aGCCACGaggGUUcgacaccccgccGUGCGCUGugcuggcgcaGCGUAUGCg -3'
miRNA:   3'- -UGGUGCa--UAA------------CGCGCGAC----------CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 126062 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 57484 0.69 0.861229
Target:  5'- gGCgGCGgcg-GCGaagauGCUGGCGcGCGCg -3'
miRNA:   3'- -UGgUGCauaaCGCg----CGACCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 8319 0.69 0.853474
Target:  5'- -gCACGcuuguUUGCGCGC-GGCauGUGCGCc -3'
miRNA:   3'- ugGUGCau---AACGCGCGaCCG--CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 150729 0.69 0.829027
Target:  5'- cGCCAaagGUcGCGCGCggGGCGUACu- -3'
miRNA:   3'- -UGGUgcaUAaCGCGCGa-CCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 22710 0.7 0.811815
Target:  5'- aGCCACGaGUgcgGCGCGCaaGCGUGUGUc -3'
miRNA:   3'- -UGGUGCaUAa--CGCGCGacCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 125450 0.7 0.789385
Target:  5'- uCCACGUAcacucucgcggcgGCGuCGCUGGCGgagaacuccucggcgGCGCg -3'
miRNA:   3'- uGGUGCAUaa-----------CGC-GCGACCGCa--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 104348 0.7 0.783864
Target:  5'- cACCGCGcucUUGCGCGCauGCGUuaaugucGCGCg -3'
miRNA:   3'- -UGGUGCau-AACGCGCGacCGCA-------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 43629 0.7 0.779225
Target:  5'- cUCGCGUGgucGCGCGUUacgcucgcuucgccaGGCGUugGCc -3'
miRNA:   3'- uGGUGCAUaa-CGCGCGA---------------CCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 54908 0.66 0.941519
Target:  5'- uCCACGcgaagGUcgcgGCGCuGCUGGCGaACGg -3'
miRNA:   3'- uGGUGCa----UAa---CGCG-CGACCGCaUGCg -5'
24415 3' -54.7 NC_005264.1 + 83247 0.66 0.946036
Target:  5'- gGCCGCcgc-UGaUGCGCUGGCGcgGCGa -3'
miRNA:   3'- -UGGUGcauaAC-GCGCGACCGCa-UGCg -5'
24415 3' -54.7 NC_005264.1 + 67626 0.66 0.946036
Target:  5'- cGCCACGc---GgGCGCaggGGUGUccuGCGCg -3'
miRNA:   3'- -UGGUGCauaaCgCGCGa--CCGCA---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 125284 0.66 0.950317
Target:  5'- uCCGCGgcg-GCGCGCUGuCGcuuCGCc -3'
miRNA:   3'- uGGUGCauaaCGCGCGACcGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 124874 0.66 0.950317
Target:  5'- cGCCACGUGccGCGCaaCUGGCuaacCGCc -3'
miRNA:   3'- -UGGUGCAUaaCGCGc-GACCGcau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 95441 0.66 0.952774
Target:  5'- aGCCGuCGUGgaauacgcuacCGCGCcGGCGgGCGCa -3'
miRNA:   3'- -UGGU-GCAUaac--------GCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 112672 0.66 0.954365
Target:  5'- gGCCACGgagUAUUGCGgcaCGCccuCGUGCGCc -3'
miRNA:   3'- -UGGUGC---AUAACGC---GCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 103004 1.12 0.002566
Target:  5'- cACCACGUAUUGCGCGCUGGCGUACGCg -3'
miRNA:   3'- -UGGUGCAUAACGCGCGACCGCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.