miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 110699 0.68 0.868775
Target:  5'- cGCCACGgacugaAUUGUaucGCGCUGGaacACGCa -3'
miRNA:   3'- -UGGUGCa-----UAACG---CGCGACCgcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 96640 0.68 0.86803
Target:  5'- gGCCGCGgag-GCGCaccgcccgccgauGCgGGCgGUGCGCu -3'
miRNA:   3'- -UGGUGCauaaCGCG-------------CGaCCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 92084 0.69 0.861229
Target:  5'- cACCGCGuUGUUGC-CGCUuGCucgccuGUACGCg -3'
miRNA:   3'- -UGGUGC-AUAACGcGCGAcCG------CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 83132 0.69 0.861229
Target:  5'- gGCCGCGgag-GCGCGUcugcccucaUGGUGUcuguCGCg -3'
miRNA:   3'- -UGGUGCauaaCGCGCG---------ACCGCAu---GCG- -5'
24415 3' -54.7 NC_005264.1 + 29585 0.69 0.861229
Target:  5'- cGCUGCGUccuuugucUUGCGCGUcGGCGcUugGCu -3'
miRNA:   3'- -UGGUGCAu-------AACGCGCGaCCGC-AugCG- -5'
24415 3' -54.7 NC_005264.1 + 117229 0.67 0.93177
Target:  5'- uACCGCGgccucUGCGgGCgGGUG-AUGCa -3'
miRNA:   3'- -UGGUGCaua--ACGCgCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 56129 0.67 0.93177
Target:  5'- gACCACuag--GCGCGCgagugucGCGUugGCc -3'
miRNA:   3'- -UGGUGcauaaCGCGCGac-----CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 35534 0.66 0.936765
Target:  5'- cCCACGg---GCGCcuuGUUGGCGUuccugaaccaacACGCc -3'
miRNA:   3'- uGGUGCauaaCGCG---CGACCGCA------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 112672 0.66 0.954365
Target:  5'- gGCCACGgagUAUUGCGgcaCGCccuCGUGCGCc -3'
miRNA:   3'- -UGGUGC---AUAACGC---GCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 95441 0.66 0.952774
Target:  5'- aGCCGuCGUGgaauacgcuacCGCGCcGGCGgGCGCa -3'
miRNA:   3'- -UGGU-GCAUaac--------GCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 124874 0.66 0.950317
Target:  5'- cGCCACGUGccGCGCaaCUGGCuaacCGCc -3'
miRNA:   3'- -UGGUGCAUaaCGCGc-GACCGcau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 125284 0.66 0.950317
Target:  5'- uCCGCGgcg-GCGCGCUGuCGcuuCGCc -3'
miRNA:   3'- uGGUGCauaaCGCGCGACcGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 67626 0.66 0.946036
Target:  5'- cGCCACGc---GgGCGCaggGGUGUccuGCGCg -3'
miRNA:   3'- -UGGUGCauaaCgCGCGa--CCGCA---UGCG- -5'
24415 3' -54.7 NC_005264.1 + 83247 0.66 0.946036
Target:  5'- gGCCGCcgc-UGaUGCGCUGGCGcgGCGa -3'
miRNA:   3'- -UGGUGcauaAC-GCGCGACCGCa-UGCg -5'
24415 3' -54.7 NC_005264.1 + 54908 0.66 0.941519
Target:  5'- uCCACGcgaagGUcgcgGCGCuGCUGGCGaACGg -3'
miRNA:   3'- uGGUGCa----UAa---CGCG-CGACCGCaUGCg -5'
24415 3' -54.7 NC_005264.1 + 25198 0.66 0.941519
Target:  5'- gGCCGCGUA---CGUGUUGGCGcACa- -3'
miRNA:   3'- -UGGUGCAUaacGCGCGACCGCaUGcg -5'
24415 3' -54.7 NC_005264.1 + 85844 0.66 0.941519
Target:  5'- uACCGgGUcUUGCGCGCacuucuucGGUGgguCGCa -3'
miRNA:   3'- -UGGUgCAuAACGCGCGa-------CCGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 114478 0.66 0.936765
Target:  5'- -aCGCGgcacUGCGCaacgaggccGCcaUGGCGUGCGCc -3'
miRNA:   3'- ugGUGCaua-ACGCG---------CG--ACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 84249 0.66 0.936765
Target:  5'- uACCGCGUGgacaCGCGCU-GCGUugcUGCg -3'
miRNA:   3'- -UGGUGCAUaac-GCGCGAcCGCAu--GCG- -5'
24415 3' -54.7 NC_005264.1 + 43659 0.66 0.936765
Target:  5'- -gUACGgucgGCGCGCUGcGCGccgGCGUu -3'
miRNA:   3'- ugGUGCauaaCGCGCGAC-CGCa--UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.