miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 31976 0.68 0.881815
Target:  5'- gGCCGCGUGUccgaUGCGCGCUacaGCGccaucgauagggAUGCu -3'
miRNA:   3'- -UGGUGCAUA----ACGCGCGAc--CGCa-----------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 131718 0.68 0.896769
Target:  5'- cGCgGCGUugcugGCGCuCUGGCGcuacaaUGCGCu -3'
miRNA:   3'- -UGgUGCAuaa--CGCGcGACCGC------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 114478 0.66 0.936765
Target:  5'- -aCGCGgcacUGCGCaacgaggccGCcaUGGCGUGCGCc -3'
miRNA:   3'- ugGUGCaua-ACGCG---------CG--ACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 124874 0.66 0.950317
Target:  5'- cGCCACGUGccGCGCaaCUGGCuaacCGCc -3'
miRNA:   3'- -UGGUGCAUaaCGCGc-GACCGcau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 18887 0.7 0.800271
Target:  5'- cACCGCGgcUugugacgagauuuuUGCGCGCaUGGUGU-CGUa -3'
miRNA:   3'- -UGGUGCauA--------------ACGCGCG-ACCGCAuGCG- -5'
24415 3' -54.7 NC_005264.1 + 83132 0.69 0.861229
Target:  5'- gGCCGCGgag-GCGCGUcugcccucaUGGUGUcuguCGCg -3'
miRNA:   3'- -UGGUGCauaaCGCGCG---------ACCGCAu---GCG- -5'
24415 3' -54.7 NC_005264.1 + 154596 0.67 0.915927
Target:  5'- cGCCGCuGgccagacuaacCGCGCUGGCGUACu- -3'
miRNA:   3'- -UGGUG-Cauaac------GCGCGACCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 95441 0.66 0.952774
Target:  5'- aGCCGuCGUGgaauacgcuacCGCGCcGGCGgGCGCa -3'
miRNA:   3'- -UGGU-GCAUaac--------GCGCGaCCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 92084 0.69 0.861229
Target:  5'- cACCGCGuUGUUGC-CGCUuGCucgccuGUACGCg -3'
miRNA:   3'- -UGGUGC-AUAACGcGCGAcCG------CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 112672 0.66 0.954365
Target:  5'- gGCCACGgagUAUUGCGgcaCGCccuCGUGCGCc -3'
miRNA:   3'- -UGGUGC---AUAACGC---GCGaccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 79216 0.67 0.909389
Target:  5'- aACUACGa---GCGuCGCuUGGCcGUGCGCu -3'
miRNA:   3'- -UGGUGCauaaCGC-GCG-ACCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 114687 0.68 0.876107
Target:  5'- aGCCACGccgagcaggAUUGCGCGgUcuCGUGCGCc -3'
miRNA:   3'- -UGGUGCa--------UAACGCGCgAccGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 56129 0.67 0.93177
Target:  5'- gACCACuag--GCGCGCgagugucGCGUugGCc -3'
miRNA:   3'- -UGGUGcauaaCGCGCGac-----CGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 84249 0.66 0.936765
Target:  5'- uACCGCGUGgacaCGCGCU-GCGUugcUGCg -3'
miRNA:   3'- -UGGUGCAUaac-GCGCGAcCGCAu--GCG- -5'
24415 3' -54.7 NC_005264.1 + 54908 0.66 0.941519
Target:  5'- uCCACGcgaagGUcgcgGCGCuGCUGGCGaACGg -3'
miRNA:   3'- uGGUGCa----UAa---CGCG-CGACCGCaUGCg -5'
24415 3' -54.7 NC_005264.1 + 125284 0.66 0.950317
Target:  5'- uCCGCGgcg-GCGCGCUGuCGcuuCGCc -3'
miRNA:   3'- uGGUGCauaaCGCGCGACcGCau-GCG- -5'
24415 3' -54.7 NC_005264.1 + 3611 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 25467 0.7 0.793947
Target:  5'- cGCCgACGUGgggGCGC-CaGGCGUACGg -3'
miRNA:   3'- -UGG-UGCAUaa-CGCGcGaCCGCAUGCg -5'
24415 3' -54.7 NC_005264.1 + 31703 0.69 0.829027
Target:  5'- cGCCAaagGUcGCGCGCggGGCGUACu- -3'
miRNA:   3'- -UGGUgcaUAaCGCGCGa-CCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 29585 0.69 0.861229
Target:  5'- cGCUGCGUccuuugucUUGCGCGUcGGCGcUugGCu -3'
miRNA:   3'- -UGGUGCAu-------AACGCGCGaCCGC-AugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.