miRNA display CGI


Results 41 - 60 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 29585 0.69 0.861229
Target:  5'- cGCUGCGUccuuugucUUGCGCGUcGGCGcUugGCu -3'
miRNA:   3'- -UGGUGCAu-------AACGCGCGaCCGC-AugCG- -5'
24415 3' -54.7 NC_005264.1 + 31703 0.69 0.829027
Target:  5'- cGCCAaagGUcGCGCGCggGGCGUACu- -3'
miRNA:   3'- -UGGUgcaUAaCGCGCGa-CCGCAUGcg -5'
24415 3' -54.7 NC_005264.1 + 114478 0.66 0.936765
Target:  5'- -aCGCGgcacUGCGCaacgaggccGCcaUGGCGUGCGCc -3'
miRNA:   3'- ugGUGCaua-ACGCG---------CG--ACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 155935 0.71 0.737102
Target:  5'- cCCACGgaaagccGCGCGCUGGgacUGCGCg -3'
miRNA:   3'- uGGUGCauaa---CGCGCGACCgc-AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 84249 0.66 0.936765
Target:  5'- uACCGCGUGgacaCGCGCU-GCGUugcUGCg -3'
miRNA:   3'- -UGGUGCAUaac-GCGCGAcCGCAu--GCG- -5'
24415 3' -54.7 NC_005264.1 + 103004 1.12 0.002566
Target:  5'- cACCACGUAUUGCGCGCUGGCGUACGCg -3'
miRNA:   3'- -UGGUGCAUAACGCGCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 36963 0.74 0.554372
Target:  5'- -gCACGacagagGUUGCGCGCUGGCGccauaguCGCc -3'
miRNA:   3'- ugGUGCa-----UAACGCGCGACCGCau-----GCG- -5'
24415 3' -54.7 NC_005264.1 + 134774 0.72 0.664693
Target:  5'- aGCC-CGUGUUcgcuuccGCGCGCUuuuacccGGCGUcGCGCg -3'
miRNA:   3'- -UGGuGCAUAA-------CGCGCGA-------CCGCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 3611 0.71 0.766064
Target:  5'- cGCCGCGggggGC-CGCgagGGCGgGCGCg -3'
miRNA:   3'- -UGGUGCauaaCGcGCGa--CCGCaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 92084 0.69 0.861229
Target:  5'- cACCGCGuUGUUGC-CGCUuGCucgccuGUACGCg -3'
miRNA:   3'- -UGGUGC-AUAACGcGCGAcCG------CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 25467 0.7 0.793947
Target:  5'- cGCCgACGUGgggGCGC-CaGGCGUACGg -3'
miRNA:   3'- -UGG-UGCAUaa-CGCGcGaCCGCAUGCg -5'
24415 3' -54.7 NC_005264.1 + 131718 0.68 0.896769
Target:  5'- cGCgGCGUugcugGCGCuCUGGCGcuacaaUGCGCu -3'
miRNA:   3'- -UGgUGCAuaa--CGCGcGACCGC------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 78515 0.73 0.632898
Target:  5'- cACCGCGcUGgguacGCGcCGCUGGCGUcuuguuuacgcuauGCGCg -3'
miRNA:   3'- -UGGUGC-AUaa---CGC-GCGACCGCA--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 137636 0.66 0.954365
Target:  5'- gGCCACcg--UGUGCGCcaacaCGUACGCg -3'
miRNA:   3'- -UGGUGcauaACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137791 0.71 0.766064
Target:  5'- cACCAUcugGUUGCaGCGCaUGGC-UACGCa -3'
miRNA:   3'- -UGGUGca-UAACG-CGCG-ACCGcAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 43629 0.7 0.779225
Target:  5'- cUCGCGUGgucGCGCGUUacgcucgcuucgccaGGCGUugGCc -3'
miRNA:   3'- uGGUGCAUaa-CGCGCGA---------------CCGCAugCG- -5'
24415 3' -54.7 NC_005264.1 + 70578 0.68 0.896769
Target:  5'- uCUACGUGgcgaagaGCGCGCUuGGCG-AgGCg -3'
miRNA:   3'- uGGUGCAUaa-----CGCGCGA-CCGCaUgCG- -5'
24415 3' -54.7 NC_005264.1 + 53941 0.68 0.88322
Target:  5'- uCCGCGUuagaccGCGCGCaccacaUGGCGUcacuuauugGCGCc -3'
miRNA:   3'- uGGUGCAuaa---CGCGCG------ACCGCA---------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 131001 0.68 0.88322
Target:  5'- cCCAUGUcUUGcCGCGCgcggcacGGCagaGUACGCg -3'
miRNA:   3'- uGGUGCAuAAC-GCGCGa------CCG---CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 16766 0.68 0.890109
Target:  5'- cCCGCGcgGggGCGCGCUguucgGGCcggACGCa -3'
miRNA:   3'- uGGUGCa-UaaCGCGCGA-----CCGca-UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.