miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24415 3' -54.7 NC_005264.1 + 78515 0.73 0.632898
Target:  5'- cACCGCGcUGgguacGCGcCGCUGGCGUcuuguuuacgcuauGCGCg -3'
miRNA:   3'- -UGGUGC-AUaa---CGC-GCGACCGCA--------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 142264 0.71 0.746861
Target:  5'- gACUAUGgaacacccGCGCGCUGGCaGaGCGCg -3'
miRNA:   3'- -UGGUGCauaa----CGCGCGACCG-CaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 6823 0.66 0.946036
Target:  5'- cACCGCGcaa-GCGuCGCcgGGCGUACcuuGCu -3'
miRNA:   3'- -UGGUGCauaaCGC-GCGa-CCGCAUG---CG- -5'
24415 3' -54.7 NC_005264.1 + 79898 0.66 0.941519
Target:  5'- gGCCugGUcuUUGCGUGCgcgUGGCcgACGUc -3'
miRNA:   3'- -UGGugCAu-AACGCGCG---ACCGcaUGCG- -5'
24415 3' -54.7 NC_005264.1 + 52205 0.66 0.941519
Target:  5'- gGCCGUGgg--GCGCGgUGGCGcgagcuggUACGCc -3'
miRNA:   3'- -UGGUGCauaaCGCGCgACCGC--------AUGCG- -5'
24415 3' -54.7 NC_005264.1 + 22146 0.66 0.941519
Target:  5'- gACgCGCGccuuagAUUGCGcCGCgGGCcGUACGUc -3'
miRNA:   3'- -UG-GUGCa-----UAACGC-GCGaCCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 162685 0.66 0.936765
Target:  5'- -gUACGgucgGCGCGCUGcGCGccgGCGUu -3'
miRNA:   3'- ugGUGCauaaCGCGCGAC-CGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 154561 0.66 0.936765
Target:  5'- cCCACGg---GCGCcuuGUUGGCGUuccugaaccaacACGCc -3'
miRNA:   3'- uGGUGCauaaCGCG---CGACCGCA------------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 34252 0.66 0.936765
Target:  5'- cCCGCcUcgUGCGCGCgguaauccGCGUGCuGCg -3'
miRNA:   3'- uGGUGcAuaACGCGCGac------CGCAUG-CG- -5'
24415 3' -54.7 NC_005264.1 + 16766 0.68 0.890109
Target:  5'- cCCGCGcgGggGCGCGCUguucgGGCcggACGCa -3'
miRNA:   3'- uGGUGCa-UaaCGCGCGA-----CCGca-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 24898 0.66 0.946036
Target:  5'- cGCUcuuCGUAUagucGCGuCGCUGGgGUgACGCg -3'
miRNA:   3'- -UGGu--GCAUAa---CGC-GCGACCgCA-UGCG- -5'
24415 3' -54.7 NC_005264.1 + 66968 0.66 0.950317
Target:  5'- cCCAUc----GCgGCGUUGGUGUACGCc -3'
miRNA:   3'- uGGUGcauaaCG-CGCGACCGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 126062 0.69 0.861229
Target:  5'- cCCuuuuCGUAUucUGCGCGCaagcGGCGacgGCGCc -3'
miRNA:   3'- uGGu---GCAUA--ACGCGCGa---CCGCa--UGCG- -5'
24415 3' -54.7 NC_005264.1 + 55120 0.68 0.868775
Target:  5'- aGCCACGaggGUUcgacaccccgccGUGCGCUGugcuggcgcaGCGUAUGCg -3'
miRNA:   3'- -UGGUGCa--UAA------------CGCGCGAC----------CGCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 27928 0.68 0.876107
Target:  5'- gACCGCgGUGUuggcguucUGCGCGUcggUGGuCGUGuCGCu -3'
miRNA:   3'- -UGGUG-CAUA--------ACGCGCG---ACC-GCAU-GCG- -5'
24415 3' -54.7 NC_005264.1 + 88076 0.68 0.876107
Target:  5'- -aCAUGUAUUGCGC-CaaGCaGUGCGCg -3'
miRNA:   3'- ugGUGCAUAACGCGcGacCG-CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 151003 0.68 0.881815
Target:  5'- gGCCGCGUGUccgaUGCGCGCUacaGCGccaucgauagggAUGCu -3'
miRNA:   3'- -UGGUGCAUA----ACGCGCGAc--CGCa-----------UGCG- -5'
24415 3' -54.7 NC_005264.1 + 131001 0.68 0.88322
Target:  5'- cCCAUGUcUUGcCGCGCgcggcacGGCagaGUACGCg -3'
miRNA:   3'- uGGUGCAuAAC-GCGCGa------CCG---CAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 137636 0.66 0.954365
Target:  5'- gGCCACcg--UGUGCGCcaacaCGUACGCg -3'
miRNA:   3'- -UGGUGcauaACGCGCGacc--GCAUGCG- -5'
24415 3' -54.7 NC_005264.1 + 109368 0.66 0.951964
Target:  5'- uUgGCGaugUGCGCGUUgcgccuagucaagucGGCGUugGCg -3'
miRNA:   3'- uGgUGCauaACGCGCGA---------------CCGCAugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.