miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24416 3' -59.6 NC_005264.1 + 4349 0.66 0.759512
Target:  5'- cGGCUGAGC-GCGCGucGCAgCAUGc- -3'
miRNA:   3'- aCCGACUCGcCGCGCc-UGUgGUACua -5'
24416 3' -59.6 NC_005264.1 + 123376 0.66 0.759512
Target:  5'- cGGCUGAGC-GCGCGucGCAgCAUGc- -3'
miRNA:   3'- aCCGACUCGcCGCGCc-UGUgGUACua -5'
24416 3' -59.6 NC_005264.1 + 62751 0.66 0.759512
Target:  5'- -cGCUGAGCccCGCGGcCGCCAUGc- -3'
miRNA:   3'- acCGACUCGccGCGCCuGUGGUACua -5'
24416 3' -59.6 NC_005264.1 + 57148 0.66 0.759512
Target:  5'- aGGCUGGucugucuuugcGcCGGCGgGaGACGCCGUGu- -3'
miRNA:   3'- aCCGACU-----------C-GCCGCgC-CUGUGGUACua -5'
24416 3' -59.6 NC_005264.1 + 157685 0.66 0.759512
Target:  5'- aGGCUucggacGAuGCGGCGCGGcCGCgCAUcGAg -3'
miRNA:   3'- aCCGA------CU-CGCCGCGCCuGUG-GUA-CUa -5'
24416 3' -59.6 NC_005264.1 + 16564 0.66 0.758571
Target:  5'- cGG-UGGGCGGCGCcGGggcggcgGCGCaCAUGAc -3'
miRNA:   3'- aCCgACUCGCCGCG-CC-------UGUG-GUACUa -5'
24416 3' -59.6 NC_005264.1 + 37240 0.66 0.750051
Target:  5'- cGGCcccUGGGgGGCGCau-CACCGUGGa -3'
miRNA:   3'- aCCG---ACUCgCCGCGccuGUGGUACUa -5'
24416 3' -59.6 NC_005264.1 + 156267 0.66 0.750051
Target:  5'- cGGCcccUGGGgGGCGCau-CACCGUGGa -3'
miRNA:   3'- aCCG---ACUCgCCGCGccuGUGGUACUa -5'
24416 3' -59.6 NC_005264.1 + 125141 0.66 0.750051
Target:  5'- cUGGCUGcGCaacgGGCGUGGGCugCGa--- -3'
miRNA:   3'- -ACCGACuCG----CCGCGCCUGugGUacua -5'
24416 3' -59.6 NC_005264.1 + 113981 0.66 0.740491
Target:  5'- cGGCgaGAGaUGGagcaGCGGAaacauCACCAUGAUg -3'
miRNA:   3'- aCCGa-CUC-GCCg---CGCCU-----GUGGUACUA- -5'
24416 3' -59.6 NC_005264.1 + 48075 0.66 0.740491
Target:  5'- cGGCcGAGCGGCGCagGGACAa---GAa -3'
miRNA:   3'- aCCGaCUCGCCGCG--CCUGUgguaCUa -5'
24416 3' -59.6 NC_005264.1 + 95356 0.66 0.711291
Target:  5'- gGGCcgacGGGCGGCGCGuGcCGCCAa--- -3'
miRNA:   3'- aCCGa---CUCGCCGCGC-CuGUGGUacua -5'
24416 3' -59.6 NC_005264.1 + 30115 0.67 0.691482
Target:  5'- -uGC-GGGCGGCGCGG-CACCGa--- -3'
miRNA:   3'- acCGaCUCGCCGCGCCuGUGGUacua -5'
24416 3' -59.6 NC_005264.1 + 17367 0.67 0.691482
Target:  5'- cUGGC--GGCGGCGCGGucuguguacguGCGCCGUu-- -3'
miRNA:   3'- -ACCGacUCGCCGCGCC-----------UGUGGUAcua -5'
24416 3' -59.6 NC_005264.1 + 90162 0.67 0.677497
Target:  5'- aGGCgaucagGGGgGGCGacucugacuuacaGGACACUAUGAa -3'
miRNA:   3'- aCCGa-----CUCgCCGCg------------CCUGUGGUACUa -5'
24416 3' -59.6 NC_005264.1 + 58003 0.67 0.671481
Target:  5'- gUGGCUcAGCGGCcccgGCGGACagGCCGUc-- -3'
miRNA:   3'- -ACCGAcUCGCCG----CGCCUG--UGGUAcua -5'
24416 3' -59.6 NC_005264.1 + 136235 0.67 0.671481
Target:  5'- gGGCcGAgGUGGCGaCGGACACggcuCAUGGg -3'
miRNA:   3'- aCCGaCU-CGCCGC-GCCUGUG----GUACUa -5'
24416 3' -59.6 NC_005264.1 + 26122 0.67 0.651354
Target:  5'- cGGCUc-GUGGCGCGG-CGCCGaGAg -3'
miRNA:   3'- aCCGAcuCGCCGCGCCuGUGGUaCUa -5'
24416 3' -59.6 NC_005264.1 + 155955 0.67 0.651354
Target:  5'- gGGaCUGcGCGGCucGCGGACGCUcUGGc -3'
miRNA:   3'- aCC-GACuCGCCG--CGCCUGUGGuACUa -5'
24416 3' -59.6 NC_005264.1 + 95471 0.67 0.651354
Target:  5'- gGGCgcAGCGaGCGCGGGCGCUAc--- -3'
miRNA:   3'- aCCGacUCGC-CGCGCCUGUGGUacua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.